TVAG_201900 (Trichomonas vaginalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 TVAG_201900 T333481_2.00 EuPathDB (2015-Mar-30)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NCU02326
M02489_2.00
Neurospora crassa
NNNNTATTRWWAN

NTWWYAATANNNN
PBM
Weirauch et al.(2014)
pTH8922
0.453 0.304
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW

AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.430 0.333
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD

HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.430 0.333
SOX21
M03497_2.00
Homo sapiens
AACAATKKYAKTGTT

AACAMTRMMATTGTT
SELEX
Jolma et al.(2013)
SOX21_1
0.421 0.377
SOX21
M03498_2.00
Homo sapiens
AACAATRKDYAKTGTT

AACAMTRHMYATTGTT
SELEX
Jolma et al.(2013)
SOX21_2
0.421 0.377
SOX21
M03499_2.00
Homo sapiens
TCAATGDYAKTGA

TCAMTRHCATTGA
SELEX
Jolma et al.(2013)
SOX21_3
0.421 0.377
SOX21
M03500_2.00
Homo sapiens
TGAATGKYAKTCA

TGAMTRMCATTCA
SELEX
Jolma et al.(2013)
SOX21_4
0.421 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TVAG_201900 Sox 39 107

Links

Other Sox family TFs
Other Trichomonas vaginalis TFs

Invalid Input OrderBy

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action