TVAG_280760 (Trichomonas vaginalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 TVAG_280760 T333486_2.00 EuPathDB (2015-Mar-30)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NCU02326
M02489_2.00
Neurospora crassa
NNNNTATTRWWAN

NTWWYAATANNNN
PBM
Weirauch et al.(2014)
pTH8922
0.443 0.304
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW

AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.440 0.275
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD

HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.440 0.275
Sox21b
M03983_2.00
Drosophila melanogaster
NAACAMTWNCAKTGTTB

VAACAMTGNWAKTGTTN
SELEX
Nitta et al.(2015)
Sox21b_1
0.417 0.420
D
M03969_2.00
Drosophila melanogaster
AMVGAACAAT

ATTGTTCBKT
SELEX
Nitta et al.(2015)
D_1
0.417 0.406
D
M03970_2.00
Drosophila melanogaster
NAACAATDNCATTGTTN

NAACAATGNHATTGTTN
SELEX
Nitta et al.(2015)
D_2
0.417 0.406
D
M06559_2.00
Drosophila melanogaster
BCYWTTGTTNT

ANAACAAWRGV
B1H
Mathelier et al.(2014)
MA0445.1
0.417 0.406
D
M06448_2.00
Drosophila melanogaster
BCYATTGTYNW

WNRACAATRGV
B1H
Zhu et al.(2011)
D_NAR_FBgn0000411
0.417 0.406
D
M09694_2.00
Drosophila melanogaster
RACAAWRGVH

DBCYWTTGTY
Misc
Kulakovskiy et al.(2009)
D
0.417 0.406
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TVAG_280760 Sox 40 108

Links

Other Sox family TFs
Other Trichomonas vaginalis TFs

392 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZNF33B Homo sapiens ENSG00000196693 D 0.000
ENSCHOG00000002296 Choloepus hoffmanni ENSCHOG00000002296 I 0.000
ENSP00000304268-D1 Bos grunniens ENSP00000304268-D1 I 0.000
ENSTBEG00000001063 Tupaia belangeri ENSTBEG00000001063 I 0.000
ZNF33B Pan troglodytes ENSPTRG00000002430 I 0.000
ENSPPYG00000002799 Pongo abelii ENSPPYG00000002799 I 0.000
ENSPCAG00000006890 Procavia capensis ENSPCAG00000006890 I 0.000
ENSOGAG00000003983 Otolemur garnettii ENSOGAG00000003983 I 0.000
ENSOCUG00000029543 Oryctolagus cuniculus ENSOCUG00000029543 I 0.000
ENSOARG00000003854 Ovis aries ENSOARG00000003854 I 0.000
ENSNLEG00000001249 Nomascus leucogenys ENSNLEG00000001249 I 0.000
ZNF33B Macaca mulatta ENSMMUG00000010528 I 0.000
ZNF33B Gorilla gorilla ENSGGOG00000012244 I 0.000
ENSECAG00000014705 Equus caballus ENSECAG00000014705 I 0.000
Myotis_brandtii_ZNF33B_10005144 Myotis brandtii Myotis_brandtii_ZNF33B_10005144 I 0.000