Ca_05811 (Cicer arietinum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ca_05811 T333590_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.445 0.665
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.445 0.665
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_05811 Sox 139 205
Ca_05811 Sox 255 321
Ca_05811 Sox 384 452

Links

Other Sox family TFs
Other Cicer arietinum TFs

Invalid Input OrderBy

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action