Cla010647 (Citrullus lanatus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cla010647 T333642_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla010647 Sox 25 55
Cla010647 Sox 52 79

Links

Other Sox family TFs
Other Citrullus lanatus TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10027787.g Linum usitatissimum Lus10027787.g N 0.619
Lus10035991.g Linum usitatissimum Lus10035991.g N 0.611
Lus10016695.g Linum usitatissimum Lus10016695.g N 0.611
MDP0000699531 Malus domestica MDP0000699531 N 0.605
Bra012832 Brassica rapa Bra012832 N 0.595
Lus10013219.g Linum usitatissimum Lus10013219.g N 0.591
Ca_10726 Cicer arietinum Ca_10726 N 0.583
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.578
OLONG_009629 Oryza longistaminata OLONG_009629 N 0.567
Pm010381 Prunus mume Pm010381 N 0.534
OPUNC09G17310 Oryza punctata OPUNC09G17310 N 0.526
OBART09G18880 Oryza barthii OBART09G18880 N 0.526
OGLUM09G19410 Oryza glumaepatula OGLUM09G19410 N 0.526
BGIOSGA031227 Oryza indica BGIOSGA031227 N 0.526
Bo6g005800 Brassica oleracea Bo6g005800 N 0.518
HelroG178674 Helobdella robusta HelroG178674 N 0.506
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.499
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N 0.495
PGSC0003DMG400001413 Solanum tuberosum PGSC0003DMG400001413 N 0.493
BGIBMGA006156 Bombyx mori BGIBMGA006156 N 0.490
CLEC004367 Cimex lectularius CLEC004367 N 0.480
M407DRAFT_45069 Tulasnella calospora M407DRAFT_45069 N 0.478
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.477
PEQ_0000006801 Parascaris equorum PEQ_0000006801 N 0.475
ASIS002444 Anopheles sinensis ASIS002444 N 0.449
EEL_0000370701 Elaeophora elaphi EEL_0000370701 N 0.447
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.445
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N 0.444
fgenesh1_pg.C_scaffold_10000369 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_10000369 N 0.442
SCHCODRAFT_105718 Schizophyllum commune SCHCODRAFT_105718 N 0.433
D917_04157 Trichinella nativa D917_04157 N 0.429
TCF7L2 Tursiops truncatus ENSTTRG00000002360 N 0.424
RHTO_04537 Rhodosporidium toruloides RHTO_04537 N 0.420
TriadG58720 Trichoplax adhaerens TriadG58720 N 0.415