Cla011101 (Citrullus lanatus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cla011101 T333643_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.494 0.704
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.494 0.704
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla011101 Sox 172 238
Cla011101 Sox 289 355
Cla011101 Sox 417 485

Links

Other Sox family TFs
Other Citrullus lanatus TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_016416 Theobroma cacao TCM_016416 I 0.642
30190.m010807 Ricinus communis 30190.m010807 I 0.620
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.616
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.615
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.605
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.603
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.595
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.593
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.590
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.584
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.579
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.578
Pm024077 Prunus mume Pm024077 I 0.578
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.575
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.554
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.554
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.543
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.543
PK10992.1 Cannabis sativa PK10992.1 I 0.534
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.533
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.532
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.524
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.522
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.522
mgf015439m Mimulus guttatus mgf015439m I 0.520
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.518
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.515
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.511
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.504
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.496
HMGB13 Arabidopsis thaliana AT4G11080 D 0.494
MDP0000268093 Malus domestica MDP0000268093 I 0.492
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.490
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.489
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.488
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.484
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.483
HMGB6 Arabidopsis thaliana AT4G23800 I 0.481
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.477
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.474
Si017040m.g Setaria italica Si017040m.g I 0.472
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.471
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.470
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.462
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.455
Bo1g037180 Brassica oleracea Bo1g037180 I 0.455
Bra013731 Brassica rapa Bra013731 I 0.455
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.454
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.445
OB02G19930 Oryza brachyantha OB02G19930 N 0.445
Bra035256 Brassica rapa Bra035256 I 0.435
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.434
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.434
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.427
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.425
Lus10033951.g Linum usitatissimum Lus10033951.g N 0.422
Ca_05811 Cicer arietinum Ca_05811 I 0.420
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.418
estExt_Genewise1.C_610004 Physcomitrella patens estExt_Genewise1.C_610004 N 0.415