CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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ENSBTAP00000027633-D1
(
Bos grunniens
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
ENSBTAP00000027633-D1
T333677_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sox8
M00197_2.00
Mus musculus
NNNWBAAT
ATTVWNNN
PBM
Badis et al.(2009)
Sox8_1733
0.208
1.000
SOX8
M03483_2.00
Homo sapiens
AACAATRTGCAGTGTT
AACACTGCAYATTGTT
SELEX
Jolma et al.(2013)
SOX8_1
0.208
1.000
SOX8
M03484_2.00
Homo sapiens
ATGAATTKCAGTC
GACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX8_2
0.208
1.000
SOX8
M03485_2.00
Homo sapiens
RAACAATTKCAGTGTTN
NAACACTGMAATTGTTY
SELEX
Jolma et al.(2013)
SOX8_3
0.208
1.000
SOX8
M03486_2.00
Homo sapiens
HATCAATTKCAGTGATN
NATCACTGMAATTGATD
SELEX
Jolma et al.(2013)
SOX8_4
0.208
1.000
SOX8
M03487_2.00
Homo sapiens
TGAATRTKCAGTCA
TGACTGMAYATTCA
SELEX
Jolma et al.(2013)
SOX8_5
0.208
1.000
SOX8
M03488_2.00
Homo sapiens
AACAATTDCAGTGTT
AACACTGHAATTGTT
SELEX
Jolma et al.(2013)
SOX8_6
0.208
1.000
SOX8
M03489_2.00
Homo sapiens
ATGAATTKCAGTC
GACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX8_7
0.208
1.000
SOX8
M03490_2.00
Homo sapiens
MATCAATTGCAGTGATK
MATCACTGCAATTGATK
SELEX
Jolma et al.(2013)
SOX8_8
0.208
1.000
SOX8
M05749_2.00
Homo sapiens
NDAACAATRV
BYATTGTTHN
SELEX
Yin et al.(2017)
SOX8_eDBD_HT-SELEX
0.208
1.000
SOX8
M05751_2.00
Homo sapiens
ACAATRVNNBYATTGT
ACAATRVNNBYATTGT
SELEX
Yin et al.(2017)
SOX8_FL_HT-SELEX
0.208
1.000
SOX8
M05750_2.00
Homo sapiens
BYATTGTTNN
NNAACAATRV
SELEX
Yin et al.(2017)
SOX8_eDBD_Methyl-HT-SELEX
0.208
1.000
SOX8
M05752_2.00
Homo sapiens
ACAATRVNNBYATTGT
ACAATRVNNBYATTGT
SELEX
Yin et al.(2017)
SOX8_FL_Methyl-HT-SELEX
0.208
1.000
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000027633-D1
Sox
1
36
TLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYK
Links
Other
Sox
family TFs
Other
Bos grunniens
TFs
228 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy