Gfo_R011321 (Geospiza fortis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Gfo_R011321 T333745_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hbp1
M00194_2.00
Mus musculus
NNNDDNNN

NNNHHNNN
PBM
Badis et al.(2009)
Hbp1_2241
0.741 1.000
HBP1
M11299_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HBP1_Q2
0.741 1.000
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R011321 Sox 437 504

Links

Other Sox family TFs
Other Geospiza fortis TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AACERI_AaceriAAR026W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAR026W I 0.420
Aan_R000440 Calypte anna Aan_R000440 I 0.741
Afo_R001715 Aptenodytes forsteri Afo_R001715 I 0.741
AGOS_AAR026W Ashbya gossypii AGOS_AAR026W I 0.429
Alligator_sinensis_CCG000124.1 Alligator sinensis Alligator_sinensis_CCG000124.1 I 0.741
Brh_R002687 Buceros rhinoceros Brh_R002687 I 0.741
CANTEDRAFT_136140 Candida tenuis CANTEDRAFT_136140 I 0.415
CGI_10003963 Crassostrea gigas CGI_10003963 I 0.566
Cmyd_10005373 Chelonia mydas Cmyd_10005373 I 0.741
csin104163 Clonorchis sinensis csin104163 I 0.432
D915_09544 Fasciola hepatica D915_09544 I 0.434
DAPPUDRAFT_313324 Daphnia pulex DAPPUDRAFT_313324 I 0.551
DICSQDRAFT_40774 Dichomitus squalens DICSQDRAFT_40774 I 0.443
ECPE_0001539401 Echinostoma caproni ECPE_0001539401 I 0.443
Ecym_1257 Eremothecium cymbalariae Ecym_1257 I 0.420
ENSAMEG00000013492 Ailuropoda melanoleuca ENSAMEG00000013492 I 0.741
ENSAMXG00000017678 Astyanax mexicanus ENSAMXG00000017678 I 0.741
ENSAPLG00000007110 Anas platyrhynchos ENSAPLG00000007110 I 0.741
ENSBTAP00000044156-D1 Bos grunniens ENSBTAP00000044156-D1 I 0.741
ENSCSAG00000011395 Chlorocebus sabaeus ENSCSAG00000011395 I 0.741
ENSFALG00000010259 Ficedula albicollis ENSFALG00000010259 I 0.741
ENSGACG00000019192 Gasterosteus aculeatus ENSGACG00000019192 I 0.671
ENSGMOG00000013782 Gadus morhua ENSGMOG00000013782 I 0.741
ENSLACG00000009119 Latimeria chalumnae ENSLACG00000009119 I 0.735
ENSLOCG00000015822 Lepisosteus oculatus ENSLOCG00000015822 I 0.741
ENSMEUG00000011116 Macropus eugenii ENSMEUG00000011116 I 0.368
ENSMPUG00000018249 Mustela putorius furo ENSMPUG00000018249 I 0.741
ENSNLEG00000008761 Nomascus leucogenys ENSNLEG00000008761 I 0.741
ENSOARG00000005055 Ovis aries ENSOARG00000005055 I 0.741
ENSONIG00000008523 Oreochromis niloticus ENSONIG00000008523 I 0.741
ENSONIG00000011868 Oreochromis niloticus ENSONIG00000011868 I 0.716
ENSORLG00000009474 Oryzias latipes ENSORLG00000009474 I 0.655
ENSP00000420500 Macaca fascicularis ENSP00000420500 I 0.741
ENSPANG00000024385 Papio anubis ENSPANG00000024385 I 0.741
ENSPFOG00000003951 Poecilia formosa ENSPFOG00000003951 I 0.741
ENSPFOG00000012271 Poecilia formosa ENSPFOG00000012271 I 0.722
ENSPMAG00000002631 Petromyzon marinus ENSPMAG00000002631 I 0.610
ENSPPYG00000017898 Pongo abelii ENSPPYG00000017898 I 0.741
ENSPSIG00000012478 Pelodiscus sinensis ENSPSIG00000012478 I 0.741
ENSSHAG00000010948 Sarcophilus harrisii ENSSHAG00000010948 I 0.741
ENSSTOG00000013846 Ictidomys tridecemlineatus ENSSTOG00000013846 I 0.741
ENSTNIG00000002023 Tetraodon nigroviridis ENSTNIG00000002023 I 0.687
ENSTRUG00000011881 Takifugu rubripes ENSTRUG00000011881 I 0.684
ENSTSYG00000010057 Tarsius syrichta ENSTSYG00000010057 I 0.425
ENSXMAG00000007586 Xiphophorus maculatus ENSXMAG00000007586 I 0.722
ENSXMAG00000016455 Xiphophorus maculatus ENSXMAG00000016455 I 0.741
e_gw.61.169.1 Branchiostoma floridae e_gw.61.169.1 I 0.639
e_gw.633.29.1 Branchiostoma floridae e_gw.633.29.1 I 0.639
GA30228 Drosophila pseudoobscura FBgn0263363 I 0.425
GB51010 Apis mellifera GB51010 I 0.438
GI22721 Drosophila mojavensis FBgn0145448 I 0.432
GL12097 Drosophila persimilis FBgn0149705 I 0.425
hbp1 Xenopus tropicalis XB-GENE-950343 I 0.735
hbp1 Takifugu rubripes ENSTRUG00000016990 I 0.741
hbp1 Tetraodon nigroviridis ENSTNIG00000016027 I 0.741
HBP1 Taeniopygia guttata ENSTGUG00000003100 I 0.741
HBP1 Tupaia belangeri ENSTBEG00000007793 I 0.741
HBP1 Vicugna pacos ENSVPAG00000008629 I 0.741
HBP1 Tursiops truncatus ENSTTRG00000006826 I 0.741
HBP1 Sorex araneus ENSSARG00000007731 I 0.368
Hbp1 Rattus norvegicus ENSRNOG00000008927 I 0.741
HBP1 Felis catus ENSFCAG00000005858 I 0.741
hbp1 Gasterosteus aculeatus ENSGACG00000010054 I 0.650
HBP1 Anolis carolinensis ENSACAG00000015023 I 0.735
HBP1 Bos taurus ENSBTAG00000005524 I 0.741
HBP1 Canis familiaris ENSCAFG00000003939 I 0.741
hbp1 Danio rerio ENSDARG00000028517 I 0.741
HBP1 Dasypus novemcinctus ENSDNOG00000004405 I 0.741
HBP1 Cavia porcellus ENSCPOG00000002375 I 0.741
Hbp1 Dipodomys ordii ENSDORG00000010576 I 0.368
HBP1 Equus caballus ENSECAG00000020969 I 0.741
HBP1 Gallus gallus ENSGALG00000008050 I 0.741
HBP1 Echinops telfairi ENSETEG00000018542 I 0.368
HBP1 Homo sapiens ENSG00000105856 D 0.741
HBP1 Gorilla gorilla ENSGGOG00000007788 I 0.741
HBP1 Loxodonta africana ENSLAFG00000005317 I 0.741
HBP1 Meleagris gallopavo ENSMGAG00000006880 I 0.741
HBP1 Pteropus vampyrus ENSPVAG00000014543 I 0.741
HBP1 Pan troglodytes ENSPTRG00000019575 I 0.741
HBP1 Callithrix jacchus ENSCJAG00000016260 I 0.741
HBP1 Procavia capensis ENSPCAG00000014060 I 0.741
hbp1 Oryzias latipes ENSORLG00000004396 I 0.739
HBP1 Otolemur garnettii ENSOGAG00000013102 I 0.741
HBP1 Oryctolagus cuniculus ENSOCUG00000012758 I 0.741
HBP1 Ornithorhynchus anatinus ENSOANG00000003174 I 0.728
Hbp1 Mus musculus ENSMUSG00000002996 D 0.741
HBP1 Monodelphis domestica ENSMODG00000016376 I 0.741
HBP1 Macaca mulatta ENSMMUG00000015409 I 0.741
HBP1 Myotis lucifugus ENSMLUG00000012425 I 0.741
HBP1 Microcebus murinus ENSMICG00000012858 I 0.741
hbp1.L Xenopus laevis XB-GENE-950348 I 0.735
hbp1.S Xenopus laevis XB-GENE-17342930 I 0.735
HelroG148167 Helobdella robusta HelroG148167 I 0.431
ISCW021979 Ixodes scapularis ISCW021979 I 0.568
L798_09303 Zootermopsis nevadensis L798_09303 I 0.526
ML040423a Mnemiopsis leidyi ML040423a I 0.544
Myotis_brandtii_HBP1_10033916 Myotis brandtii Myotis_brandtii_HBP1_10033916 I 0.741
NEMVEDRAFT_v1g120503 Nematostella vectensis NEMVEDRAFT_v1g120503 I 0.604
PHUM534240 Pediculus humanus PHUM534240 I 0.549
Pvit_03004 Pogona vitticeps Pvit_03004 I 0.735
SMAR013235 Strigamia maritima SMAR013235 I 0.699
Smp_148110 Schistosoma mansoni Smp_148110 I 0.417
SNAPOd2T00000335001 Oikopleura dioica SNAPOd2T00000335001 I 0.457
T265_01499 Opisthorchis viverrini T265_01499 I 0.432
Tal_R010197 Tyto alba Tal_R010197 I 0.741
tetur23g00840 Tetranychus urticae tetur23g00840 I 0.428
TriadG55419 Trichoplax adhaerens TriadG55419 I 0.603
XP_002155149.1 Hydra magnipapillata XP_002155149.1 I 0.611
ZBAI_00389 Zygosaccharomyces bailii ZBAI_00389 I 0.435
ZBAI_05541 Zygosaccharomyces bailii ZBAI_05541 I 0.435
ZYRO0C16214g Zygosaccharomyces rouxii ZYRO0C16214g I 0.435