30190.m010807 (Ricinus communis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 30190.m010807 T333900_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.483 0.673
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.483 0.673
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30190.m010807 Sox 195 265
30190.m010807 Sox 311 377
30190.m010807 Sox 436 504

Links

Other Sox family TFs
Other Ricinus communis TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_02244 Aegilops tauschii F775_02244 I 0.000
Pavir.Da02101 Panicum virgatum Pavir.Da02101 I 0.000
Si007889m.g Setaria italica Si007889m.g I 0.000
Sb10g009580 Sorghum bicolor Sb10g009580 I 0.000
Sb10g006570 Sorghum bicolor Sb10g006570 I 0.000
Pavir.J01189 Panicum virgatum Pavir.J01189 I 0.000
GRMZM2G121111 Zea mays GRMZM2G121111 I 0.000
MLOC_54039 Hordeum vulgare MLOC_54039 I 0.000
Pavir.Ga00772 Panicum virgatum Pavir.Ga00772 N 0.000
Si015542m.g Setaria italica Si015542m.g N 0.000
Si008720m.g Setaria italica Si008720m.g N 0.000
Sb10g009650 Sorghum bicolor Sb10g009650 N 0.000
OB06G14500 Oryza brachyantha OB06G14500 N 0.000
Sb10g007420 Sorghum bicolor Sb10g007420 N 0.000
Sb01g029290 Sorghum bicolor Sb01g029290 N 0.000