30190.m010807 (Ricinus communis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 30190.m010807 T333900_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.483 0.673
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.483 0.673
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30190.m010807 Sox 195 265
30190.m010807 Sox 311 377
30190.m010807 Sox 436 504

Links

Other Sox family TFs
Other Ricinus communis TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGOS_AGL345W Ashbya gossypii AGOS_AGL345W N 0.000
BGIBMGA006156 Bombyx mori BGIBMGA006156 N 0.000
AWRI1499_2837 Brettanomyces bruxellensis AWRI1499_2837 N 0.000
CC1G_07855 Coprinopsis cinerea CC1G_07855 N 0.000
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.000
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.000
CMQ_7998 Grosmannia clavigera CMQ_7998 N 0.000
estExt_Genewise1.C_120062 Heterobasidion annosum estExt_Genewise1.C_120062 N 0.000
HETIRDRAFT_460226 Heterobasidion irregulare HETIRDRAFT_460226 N 0.000
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N 0.000
Kwal_9519 Kluyveromyces waltii Kwal_9519 N 0.000
PAS_chr3_1149 Komagataella pastoris PAS_chr3_1149 N 0.000
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N 0.000
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N 0.000
SAKL0H00726g Lachancea kluyveri SAKL0H00726g N 0.000
SAKL0D09922g Lachancea kluyveri SAKL0D09922g N 0.000
SAKL0C10648g Lachancea kluyveri SAKL0C10648g N 0.000
LALA0_S01e08702g Lachancea lanzarotensis LALA0_S01e08702g N 0.000
LALA0_S10e00254g Lachancea lanzarotensis LALA0_S10e00254g N 0.000
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N 0.000
MAC_03708 Metarhizium acridum MAC_03708 N 0.000
MBR_01289 Metarhizium brunneum MBR_01289 N 0.000
MAJ_01270 Metarhizium majus MAJ_01270 N 0.000
X797_001779 Metarhizium robertsii X797_001779 N 0.000
MVLG_01553 Microbotryum violaceum MVLG_01553 N 0.000
MPER_12197 Moniliophthora perniciosa MPER_12197 N 0.000
Moror_8439 Moniliophthora roreri Moror_8439 N 0.000
NCLIV_023590 Neospora caninum NCLIV_023590 N 0.000
HPODL_02662 Ogataea parapolymorpha HPODL_02662 N 0.000
XP_002492281.1 Pichia pastoris XP_002492281.1 N 0.000
GLOINDRAFT_9339 Rhizophagus irregularis GLOINDRAFT_9339 N 0.000
RHTO_04537 Rhodosporidium toruloides RHTO_04537 N 0.000
AACERI_AaceriAGL345W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGL345W N 0.000
sr12520 Sporisorium reilianum sr12520 N 0.000
fgenesh1_pg.C_scaffold_11000089 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000089 N 0.000
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.000
K437DRAFT_66818 Tilletiaria anomala K437DRAFT_66818 N 0.000
K437DRAFT_266676 Tilletiaria anomala K437DRAFT_266676 N 0.000
A1Q1_02593 Trichosporon asahii A1Q1_02593 N 0.000
M407DRAFT_45069 Tulasnella calospora M407DRAFT_45069 N 0.000
BN7_5943 Wickerhamomyces ciferrii BN7_5943 N 0.000