cassava1392.valid.m1 (Manihot esculenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 cassava1392.valid.m1 T333917_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.441 0.609
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava1392.valid.m1 Sox 151 220

Links

Other Sox family TFs
Other Manihot esculenta TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.561
Cla009222 Citrullus lanatus Cla009222 I 0.561
Bra026498 Brassica rapa Bra026498 I 0.556
Bo9g014140 Brassica oleracea Bo9g014140 I 0.556
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.552
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.546
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.546
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.545
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.540
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.537
30131.m007272 Ricinus communis 30131.m007272 I 0.533
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.527
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.527
Bra029371 Brassica rapa Bra029371 I 0.519
Bo2g160920 Brassica oleracea Bo2g160920 I 0.519
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.518
TCM_007659 Theobroma cacao TCM_007659 I 0.515
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.513
Ca_05351 Cicer arietinum Ca_05351 I 0.510
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.509
Pm006054 Prunus mume Pm006054 I 0.509
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.507
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.506
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.503
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.500
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.498
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.497
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.497
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.492
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.492
MDP0000205665 Malus domestica MDP0000205665 I 0.490
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.488
Ca_19340 Cicer arietinum Ca_19340 I 0.486
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.484
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.480
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.480
Ca_04825 Cicer arietinum Ca_04825 I 0.478
mgf016363m Mimulus guttatus mgf016363m I 0.477
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.476
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.471
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.471
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.470
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.470
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.470
Pm002934 Prunus mume Pm002934 I 0.470
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.470
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.470
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.470
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.470
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.470
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.470
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.470
29701.m000600 Ricinus communis 29701.m000600 I 0.470
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.469
TCM_042534 Theobroma cacao TCM_042534 I 0.467
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.466
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.466
Si007288m.g Setaria italica Si007288m.g I 0.466
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.466
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.466
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.466
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.466
OS06G0728000 Oryza sativa OS06G0728000 I 0.466
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.466
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.466
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.466
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.466
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.466
OBART06G28090 Oryza barthii OBART06G28090 I 0.466
29600.m000548 Ricinus communis 29600.m000548 I 0.464
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.463
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.463
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.461
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.459
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.459
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.459
OB06G35870 Oryza brachyantha OB06G35870 I 0.459
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.459
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.457
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.457
PK03866.1 Cannabis sativa PK03866.1 I 0.456
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.455
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.455
Ca_10725 Cicer arietinum Ca_10725 I 0.454
HMGB7 Arabidopsis thaliana AT5G23420 N 0.454
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.454
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.454
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.453
F775_27510 Aegilops tauschii F775_27510 I 0.453
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.453
PK11149.1 Cannabis sativa PK11149.1 I 0.450
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.450
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.450
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.449
mgf009124m Mimulus guttatus mgf009124m N 0.449
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.448
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.448
PK29786.1 Cannabis sativa PK29786.1 I 0.444
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.443
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.442
HMG-1 Pisum sativum Q41026_PEA D 0.441
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.441
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.440
Cla023817 Citrullus lanatus Cla023817 I 0.438
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.438
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.438
TCM_021706 Theobroma cacao TCM_021706 I 0.437
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.437
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.437
Cla018386 Citrullus lanatus Cla018386 I 0.437
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.434
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.434
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.434
Bo7g014280 Brassica oleracea Bo7g014280 I 0.433
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.433
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.433
F775_30706 Aegilops tauschii F775_30706 I 0.433
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.433
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.433
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.432
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.432
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.431
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.429
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.429
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.429
HMGB1 Arabidopsis thaliana AT3G51880 I 0.429
Bo7g101270 Brassica oleracea Bo7g101270 I 0.429
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.429
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.428
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.428
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.428
HMGB2 Arabidopsis thaliana AT1G20693 I 0.428
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.428
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.427
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.427
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.427
TCM_000068 Theobroma cacao TCM_000068 I 0.427
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.427
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.426
Bra002073 Brassica rapa Bra002073 I 0.425
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.424
30170.m014386 Ricinus communis 30170.m014386 I 0.424
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.424
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.424
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.424
MDP0000757111 Malus domestica MDP0000757111 I 0.421
MDP0000362980 Malus domestica MDP0000362980 I 0.421
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.421
Pm018913 Prunus mume Pm018913 I 0.421
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.421
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.420
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.420
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.420
Bra011624 Brassica rapa Bra011624 I 0.420
Bra017723 Brassica rapa Bra017723 I 0.420
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.420
Cla009093 Citrullus lanatus Cla009093 I 0.420
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.420
Bo1g006360 Brassica oleracea Bo1g006360 I 0.420
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.420
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.420
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.420
HMGB4 Arabidopsis thaliana AT2G17560 I 0.420
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.420
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.420
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.420
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.420
Bo7g117500 Brassica oleracea Bo7g117500 I 0.420
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.417
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.416
Bo8g081200 Brassica oleracea Bo8g081200 I 0.416
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.415
EHI_093800 Entamoeba histolytica EHI_093800 N 0.415