CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava1392.valid.m1
(
Manihot esculenta
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
cassava1392.valid.m1
T333917_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.441
0.609
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava1392.valid.m1
Sox
151
220
PKRPPTAFFIFMDEFRKAFKEANPDNRDVKKVSKEAGEKWKSMTDEEKKPYVDKAAELKAEYDKALESNN
Links
Other
Sox
family TFs
Other
Manihot esculenta
TFs
173 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.300030
Cucumis sativus
Cucsa.300030
I
0.561
Cla009222
Citrullus lanatus
Cla009222
I
0.561
Bra026498
Brassica rapa
Bra026498
I
0.556
Bo9g014140
Brassica oleracea
Bo9g014140
I
0.556
MTR_1g115220
Medicago truncatula
MTR_1g115220
I
0.552
Carubv10001858m.g
Capsella rubella
Carubv10001858m.g
I
0.546
Cagra.0086s0060
Capsella grandiflora
Cagra.0086s0060
I
0.546
GSMUA_AchrUn_randomG05290_001
Musa acuminata
GSMUA_AchrUn_randomG05290_001
I
0.545
AMTR_s00171p00070550
Amborella trichopoda
AMTR_s00171p00070550
I
0.540
estExt_fgenesh1_pm.C_880025
Physcomitrella patens
estExt_fgenesh1_pm.C_880025
I
0.537
30131.m007272
Ricinus communis
30131.m007272
I
0.533
gw1.106.59.1
Physcomitrella patens
gw1.106.59.1
I
0.527
gw1.106.60.1
Physcomitrella patens
gw1.106.60.1
I
0.527
Bra029371
Brassica rapa
Bra029371
I
0.519
Bo2g160920
Brassica oleracea
Bo2g160920
I
0.519
Bostr.10199s0131
Boechera stricta
Bostr.10199s0131
N
0.518
TCM_007659
Theobroma cacao
TCM_007659
I
0.515
GSMUA_Achr4G25860_001
Musa acuminata
GSMUA_Achr4G25860_001
I
0.513
Ca_05351
Cicer arietinum
Ca_05351
I
0.510
PRUPE_ppa026912mg
Prunus persica
PRUPE_ppa026912mg
I
0.509
Pm006054
Prunus mume
Pm006054
I
0.509
HMGB6
Vitis vinifera
VIT_10s0071g00870
I
0.507
Aquca_035_00040
Aquilegia coerulea
Aquca_035_00040
I
0.506
chr5.CM0180.220.nd
Lotus japonicus
chr5.CM0180.220.nd
I
0.503
Thhalv10004817m.g
Eutrema salsugineum
Thhalv10004817m.g
N
0.500
Gorai.001G198900
Gossypium raimondii
Gorai.001G198900
I
0.498
GLYMA10G43440
Glycine max
GLYMA10G43440
I
0.497
GLYMA20G23370
Glycine max
GLYMA20G23370
I
0.497
SapurV1A.0766s0120
Salix purpurea
SapurV1A.0766s0120
I
0.492
Lus10035511.g
Linum usitatissimum
Lus10035511.g
I
0.492
MDP0000205665
Malus domestica
MDP0000205665
I
0.490
GSMUA_Achr2G11060_001
Musa acuminata
GSMUA_Achr2G11060_001
I
0.488
Ca_19340
Cicer arietinum
Ca_19340
I
0.486
GSMUA_Achr5G11630_001
Musa acuminata
GSMUA_Achr5G11630_001
I
0.484
GSMUA_Achr11G07320_001
Musa acuminata
GSMUA_Achr11G07320_001
I
0.480
GSMUA_AchrUn_randomG22010_001
Musa acuminata
GSMUA_AchrUn_randomG22010_001
I
0.480
Ca_04825
Cicer arietinum
Ca_04825
I
0.478
mgf016363m
Mimulus guttatus
mgf016363m
I
0.477
evm.TU.supercontig_365.4
Carica papaya
evm.TU.supercontig_365.4
I
0.476
evm.TU.supercontig_11.167
Carica papaya
evm.TU.supercontig_11.167
I
0.471
Eucgr.J00336
Eucalyptus grandis
Eucgr.J00336
I
0.471
Eucgr.A00506
Eucalyptus grandis
Eucgr.A00506
I
0.470
HMGB1
Vitis vinifera
VIT_08s0007g02200
I
0.470
PGSC0003DMG400008501
Solanum tuberosum
PGSC0003DMG400008501
I
0.470
Pm002934
Prunus mume
Pm002934
I
0.470
PRUPE_ppa007518mg
Prunus persica
PRUPE_ppa007518mg
I
0.470
cassava44923.m1
Manihot esculenta
cassava44923.m1
I
0.470
GSMUA_Achr9G21200_001
Musa acuminata
GSMUA_Achr9G21200_001
I
0.470
cassava42373.valid.m1
Manihot esculenta
cassava42373.valid.m1
I
0.470
cassava42372.valid.m1
Manihot esculenta
cassava42372.valid.m1
I
0.470
cassava42371.valid.m1
Manihot esculenta
cassava42371.valid.m1
I
0.470
GSMUA_Achr2G03630_001
Musa acuminata
GSMUA_Achr2G03630_001
I
0.470
29701.m000600
Ricinus communis
29701.m000600
I
0.470
PGSC0003DMG400025304
Solanum tuberosum
PGSC0003DMG400025304
I
0.469
TCM_042534
Theobroma cacao
TCM_042534
I
0.467
Gorai.008G147700
Gossypium raimondii
Gorai.008G147700
I
0.466
Pavir.Db00040
Panicum virgatum
Pavir.Db00040
I
0.466
Si007288m.g
Setaria italica
Si007288m.g
I
0.466
Pavir.J04920
Panicum virgatum
Pavir.J04920
I
0.466
OMERI06G28030
Oryza meridionalis
OMERI06G28030
I
0.466
LPERR06G23570
Leersia perrieri
LPERR06G23570
I
0.466
OGLUM06G29480
Oryza glumaepatula
OGLUM06G29480
I
0.466
OS06G0728000
Oryza sativa
OS06G0728000
I
0.466
OLONG_007465
Oryza longistaminata
OLONG_007465
I
0.466
ONIVA06G31070
Oryza nivara
ONIVA06G31070
I
0.466
ORUFI06G30030
Oryza rufipogon
ORUFI06G30030
I
0.466
ORGLA06G0238300
Oryza glaberrima
ORGLA06G0238300
I
0.466
OPUNC06G25640
Oryza punctata
OPUNC06G25640
I
0.466
OBART06G28090
Oryza barthii
OBART06G28090
I
0.466
29600.m000548
Ricinus communis
29600.m000548
I
0.464
Ciclev10012868m.g
Citrus clementina
Ciclev10012868m.g
I
0.463
orange1.1g030283m.g
Citrus sinensis
orange1.1g030283m.g
I
0.463
Lus10028298.g
Linum usitatissimum
Lus10028298.g
I
0.461
BRADI1G29730
Brachypodium distachyon
BRADI1G29730
I
0.459
GRMZM5G834758
Zea mays
GRMZM5G834758
I
0.459
Sb10g030910
Sorghum bicolor
Sb10g030910
I
0.459
OB06G35870
Oryza brachyantha
OB06G35870
I
0.459
Lus10040192.g
Linum usitatissimum
Lus10040192.g
I
0.459
Gorai.002G263800
Gossypium raimondii
Gorai.002G263800
I
0.457
MTR_5g024180
Medicago truncatula
MTR_5g024180
I
0.457
PK03866.1
Cannabis sativa
PK03866.1
I
0.456
AMAG_02260
Allomyces macrogynus
AMAG_02260
N
0.455
AMAG_00757
Allomyces macrogynus
AMAG_00757
N
0.455
Ca_10725
Cicer arietinum
Ca_10725
I
0.454
HMGB7
Arabidopsis thaliana
AT5G23420
N
0.454
scaffold_602413.1
Arabidopsis lyrata
scaffold_602413.1
N
0.454
HMGB6
Populus trichocarpa
POPTR_0007s15320
I
0.454
TRIUR3_13577
Triticum urartu
TRIUR3_13577
I
0.453
F775_27510
Aegilops tauschii
F775_27510
I
0.453
MLOC_78556
Hordeum vulgare
MLOC_78556
I
0.453
PK11149.1
Cannabis sativa
PK11149.1
I
0.450
Ciclev10016587m.g
Citrus clementina
Ciclev10016587m.g
N
0.450
orange1.1g026850m.g
Citrus sinensis
orange1.1g026850m.g
N
0.450
Gorai.006G181900
Gossypium raimondii
Gorai.006G181900
I
0.449
mgf009124m
Mimulus guttatus
mgf009124m
N
0.449
MTR_7g068280
Medicago truncatula
MTR_7g068280
I
0.448
LjT35D08.150.nd
Lotus japonicus
LjT35D08.150.nd
I
0.448
PK29786.1
Cannabis sativa
PK29786.1
I
0.444
GSMUA_Achr10G07270_001
Musa acuminata
GSMUA_Achr10G07270_001
I
0.443
GRMZM2G162284
Zea mays
GRMZM2G162284
I
0.442
HMG-1
Pisum sativum
Q41026_PEA
D
0.441
evm.TU.supercontig_19.183
Carica papaya
evm.TU.supercontig_19.183
I
0.441
AMTR_s00044p00160130
Amborella trichopoda
AMTR_s00044p00160130
I
0.440
Cla023817
Citrullus lanatus
Cla023817
I
0.438
Cucsa.272190
Cucumis sativus
Cucsa.272190
I
0.438
gene20487-v1.0-hybrid
Fragaria vesca
gene20487-v1.0-hybrid
I
0.438
TCM_021706
Theobroma cacao
TCM_021706
I
0.437
GLYMA01G28820
Glycine max
GLYMA01G28820
I
0.437
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.437
Cla018386
Citrullus lanatus
Cla018386
I
0.437
MTR_3g115580
Medicago truncatula
MTR_3g115580
I
0.434
SELMODRAFT_38818
Selaginella moellendorffii
SELMODRAFT_38818
I
0.434
SELMODRAFT_175895
Selaginella moellendorffii
SELMODRAFT_175895
I
0.434
Bo7g014280
Brassica oleracea
Bo7g014280
I
0.433
Traes_6DL_E5B5F44FC
Triticum aestivum
Traes_6DL_E5B5F44FC
I
0.433
Traes_6BL_017F7FCF8
Triticum aestivum
Traes_6BL_017F7FCF8
I
0.433
F775_30706
Aegilops tauschii
F775_30706
I
0.433
TRIUR3_34670
Triticum urartu
TRIUR3_34670
I
0.433
Traes_6AL_9EC9874F1
Triticum aestivum
Traes_6AL_9EC9874F1
I
0.433
SapurV1A.2780s0020
Salix purpurea
SapurV1A.2780s0020
I
0.432
SapurV1A.0061s0170
Salix purpurea
SapurV1A.0061s0170
I
0.432
BGIOSGA023639
Oryza indica
BGIOSGA023639
I
0.431
Bostr.6864s0060
Boechera stricta
Bostr.6864s0060
I
0.429
Cagra.1043s0022
Capsella grandiflora
Cagra.1043s0022
I
0.429
Thhalv10010751m.g
Eutrema salsugineum
Thhalv10010751m.g
I
0.429
HMGB1
Arabidopsis thaliana
AT3G51880
I
0.429
Bo7g101270
Brassica oleracea
Bo7g101270
I
0.429
HMGB1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001281
I
0.429
HMGB2
Arabidopsis lyrata
fgenesh2_kg.1__2255__AT1G20693.2
I
0.428
Cagra.6160s0028
Capsella grandiflora
Cagra.6160s0028
I
0.428
Carubv10010586m.g
Capsella rubella
Carubv10010586m.g
I
0.428
HMGB2
Arabidopsis thaliana
AT1G20693
I
0.428
Bostr.7128s0663
Boechera stricta
Bostr.7128s0663
I
0.428
PDK_20s1306741g001
Phoenix dactylifera
PDK_20s1306741g001
I
0.427
cassava17389.m1
Manihot esculenta
cassava17389.m1
I
0.427
PDK_20s1355261g001
Phoenix dactylifera
PDK_20s1355261g001
N
0.427
TCM_000068
Theobroma cacao
TCM_000068
I
0.427
Aquca_045_00054
Aquilegia coerulea
Aquca_045_00054
I
0.427
Cucsa.067200
Cucumis sativus
Cucsa.067200
I
0.426
Bra002073
Brassica rapa
Bra002073
I
0.425
cassava35948.valid.m1
Manihot esculenta
cassava35948.valid.m1
I
0.424
30170.m014386
Ricinus communis
30170.m014386
I
0.424
cassava18626.valid.m1
Manihot esculenta
cassava18626.valid.m1
I
0.424
cassava18624.valid.m1
Manihot esculenta
cassava18624.valid.m1
I
0.424
cassava18625.valid.m1
Manihot esculenta
cassava18625.valid.m1
I
0.424
MDP0000757111
Malus domestica
MDP0000757111
I
0.421
MDP0000362980
Malus domestica
MDP0000362980
I
0.421
cassava23716.valid.m1
Manihot esculenta
cassava23716.valid.m1
I
0.421
Pm018913
Prunus mume
Pm018913
I
0.421
PRUPE_ppa012424mg
Prunus persica
PRUPE_ppa012424mg
I
0.421
SELMODRAFT_117986
Selaginella moellendorffii
SELMODRAFT_117986
I
0.420
SELMODRAFT_75453
Selaginella moellendorffii
SELMODRAFT_75453
I
0.420
HMGB4
Arabidopsis lyrata
fgenesh2_kg.3__3350__AT2G17560.1
I
0.420
Bra011624
Brassica rapa
Bra011624
I
0.420
Bra017723
Brassica rapa
Bra017723
I
0.420
PGSC0003DMG400001567
Solanum tuberosum
PGSC0003DMG400001567
I
0.420
Cla009093
Citrullus lanatus
Cla009093
I
0.420
Carubv10014808m.g
Capsella rubella
Carubv10014808m.g
I
0.420
Bo1g006360
Brassica oleracea
Bo1g006360
I
0.420
Cagra.1891s0017
Capsella grandiflora
Cagra.1891s0017
I
0.420
Bostr.18351s0219
Boechera stricta
Bostr.18351s0219
I
0.420
Cucsa.323100
Cucumis sativus
Cucsa.323100
I
0.420
HMGB4
Arabidopsis thaliana
AT2G17560
I
0.420
Solyc02g082700.2
Solanum lycopersicum
Solyc02g082700.2
I
0.420
Eucgr.F03571
Eucalyptus grandis
Eucgr.F03571
I
0.420
VIT_04s0044g00110
Vitis vinifera
VIT_04s0044g00110
I
0.420
VIT_18s0122g01190
Vitis vinifera
VIT_18s0122g01190
I
0.420
Bo7g117500
Brassica oleracea
Bo7g117500
I
0.420
Solyc04g008820.2
Solanum lycopersicum
Solyc04g008820.2
I
0.417
Carubv10018109m.g
Capsella rubella
Carubv10018109m.g
I
0.416
Bo8g081200
Brassica oleracea
Bo8g081200
I
0.416
Eucgr.J02535
Eucalyptus grandis
Eucgr.J02535
I
0.415
EHI_093800
Entamoeba histolytica
EHI_093800
N
0.415