cassava17389.m1 (Manihot esculenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 cassava17389.m1 T333921_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.514 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava17389.m1 Sox 46 115

Links

Other Sox family TFs
Other Manihot esculenta TFs

257 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.583
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.549
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.549
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.549
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.549
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.549
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.549
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.549
Cla018386 Citrullus lanatus Cla018386 I 0.549
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.549
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.549
29600.m000548 Ricinus communis 29600.m000548 I 0.547
Ca_19340 Cicer arietinum Ca_19340 I 0.543
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.543
mgf016363m Mimulus guttatus mgf016363m I 0.543
Pm002934 Prunus mume Pm002934 I 0.539
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.539
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.539
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.539
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.539
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.539
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.539
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.539
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.537
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.535
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.535
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.535
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.535
OB06G35870 Oryza brachyantha OB06G35870 I 0.535
MDP0000362980 Malus domestica MDP0000362980 I 0.533
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.533
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.533
MDP0000757111 Malus domestica MDP0000757111 I 0.533
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.533
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.533
Pm018913 Prunus mume Pm018913 I 0.533
TCM_000068 Theobroma cacao TCM_000068 I 0.532
Cla009093 Citrullus lanatus Cla009093 I 0.529
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.529
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.529
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.529
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.529
F775_27510 Aegilops tauschii F775_27510 I 0.529
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.529
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.529
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.528
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.528
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.528
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.528
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.528
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.528
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.528
OBART06G28090 Oryza barthii OBART06G28090 I 0.528
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.528
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.528
OS06G0728000 Oryza sativa OS06G0728000 I 0.528
Si007288m.g Setaria italica Si007288m.g I 0.528
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.528
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.524
Cla023817 Citrullus lanatus Cla023817 I 0.524
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.524
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.524
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.524
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.524
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.524
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.523
MDP0000275042 Malus domestica MDP0000275042 I 0.523
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.523
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.523
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.523
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.523
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.523
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.523
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.523
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.523
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.523
TCM_034406 Theobroma cacao TCM_034406 I 0.523
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.523
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.523
30170.m014386 Ricinus communis 30170.m014386 I 0.523
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.523
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.523
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.522
Ca_10725 Cicer arietinum Ca_10725 I 0.521
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.521
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.521
Si031512m.g Setaria italica Si031512m.g I 0.520
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.520
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.520
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.520
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.520
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.520
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.519
PK29786.1 Cannabis sativa PK29786.1 I 0.517
TCM_021706 Theobroma cacao TCM_021706 I 0.516
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.515
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.515
PK11149.1 Cannabis sativa PK11149.1 I 0.515
HMG-1 Pisum sativum Q41026_PEA D 0.514
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.514
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.514
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.512
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.512
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.511
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.511
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.511
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.511
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.511
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.510
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.510
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.510
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.510
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.508
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.508
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.508
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.508
HMGB1 Arabidopsis thaliana AT3G51880 I 0.508
Bo7g101270 Brassica oleracea Bo7g101270 I 0.508
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.508
HMGB2 Arabidopsis thaliana AT1G20693 I 0.505
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.505
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.505
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.505
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.505
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.505
29701.m000600 Ricinus communis 29701.m000600 I 0.505
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.505
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.505
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.505
MDP0000607529 Malus domestica MDP0000607529 I 0.505
Bo7g014280 Brassica oleracea Bo7g014280 I 0.505
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.505
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.505
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.505
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.502
mgf006113m Mimulus guttatus mgf006113m I 0.500
mgf016608m Mimulus guttatus mgf016608m I 0.500
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.500
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.500
mgf008076m Mimulus guttatus mgf008076m I 0.500
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.500
mgf014518m Mimulus guttatus mgf014518m I 0.500
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.499
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.499
TCM_042534 Theobroma cacao TCM_042534 I 0.498
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.498
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.498
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.498
Bo8g081200 Brassica oleracea Bo8g081200 I 0.496
Bra002073 Brassica rapa Bra002073 I 0.496
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.496
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.494
Bo7g061420 Brassica oleracea Bo7g061420 I 0.494
HMGB3 Arabidopsis thaliana AT1G20696 I 0.494
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.494
Bo8g070350 Brassica oleracea Bo8g070350 I 0.494
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.494
Bra025838 Brassica rapa Bra025838 I 0.494
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.494
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.494
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.494
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.494
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.494
Pm026798 Prunus mume Pm026798 I 0.494
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.493
mgf009330m Mimulus guttatus mgf009330m I 0.493
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.492
Ca_09896 Cicer arietinum Ca_09896 I 0.491
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.491
OB09G25530 Oryza brachyantha OB09G25530 I 0.491
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.491
PK03866.1 Cannabis sativa PK03866.1 I 0.488
HMGB4 Arabidopsis thaliana AT2G17560 I 0.488
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.487
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.487
OS09G0551600 Oryza sativa OS09G0551600 I 0.484
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.484
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.484
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.484
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.484
29669.m000844 Ricinus communis 29669.m000844 I 0.483
Ca_04825 Cicer arietinum Ca_04825 I 0.483
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.482
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.480
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.479
Bra037266 Brassica rapa Bra037266 I 0.479
Bo7g117500 Brassica oleracea Bo7g117500 I 0.478
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.478
Bra017723 Brassica rapa Bra017723 I 0.478
Bra011624 Brassica rapa Bra011624 I 0.478
Bo1g006360 Brassica oleracea Bo1g006360 I 0.478
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.478
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.478
Ca_05351 Cicer arietinum Ca_05351 I 0.478
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.478
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.477
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.475
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.474
mgf000913m Mimulus guttatus mgf000913m I 0.472
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.471
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.471
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.468
Bo5g030580 Brassica oleracea Bo5g030580 I 0.467
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.467
NV15871 Nasonia vitripennis NV15871 N 0.466
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.465
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.465
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.464
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.464
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.463
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.463
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.463
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.463
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.463
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.463
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.457
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.457
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.450
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.450
PK27241.1 Cannabis sativa PK27241.1 I 0.449
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.441
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.441
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.437
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.437
PK14705.1 Cannabis sativa PK14705.1 I 0.437
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.437
OBART02G27340 Oryza barthii OBART02G27340 N 0.437
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.437
F775_30706 Aegilops tauschii F775_30706 I 0.437
OB02G34710 Oryza brachyantha OB02G34710 N 0.437
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.437
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.437
OS02G0670400 Oryza sativa OS02G0670400 N 0.437
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.437
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.437
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.437
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.437
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.437
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.436
30131.m007272 Ricinus communis 30131.m007272 I 0.434
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.434
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.432
Pm006054 Prunus mume Pm006054 I 0.432
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.431
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.431
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.428
TCM_007659 Theobroma cacao TCM_007659 I 0.428
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.427
Si018635m.g Setaria italica Si018635m.g N 0.424
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.424
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.424
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.424
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.424
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.422
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.422
Cla009222 Citrullus lanatus Cla009222 I 0.422
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.416