CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava6450.valid.m1
(
Manihot esculenta
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
cassava6450.valid.m1
T333946_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava6450.valid.m1
Sox
16
75
CMEDFRKDFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDKATADYI
Links
Other
Sox
family TFs
Other
Manihot esculenta
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.011G042300
Gossypium raimondii
Gorai.011G042300
N
0.677
Traes_3DL_21C50DDF5
Triticum aestivum
Traes_3DL_21C50DDF5
N
0.597
cassava6449.valid.m1
Manihot esculenta
cassava6449.valid.m1
N
0.505
29693.m002035
Ricinus communis
29693.m002035
N
0.496
orange1.1g031573m.g
Citrus sinensis
orange1.1g031573m.g
N
0.488
TCM_029514
Theobroma cacao
TCM_029514
N
0.488
Ciclev10017037m.g
Citrus clementina
Ciclev10017037m.g
N
0.488
GSMUA_Achr4G07950_001
Musa acuminata
GSMUA_Achr4G07950_001
N
0.478
GSMUA_Achr4G15000_001
Musa acuminata
GSMUA_Achr4G15000_001
N
0.468
cassava7606.valid.m1
Manihot esculenta
cassava7606.valid.m1
N
0.468
TRIUR3_17277
Triticum urartu
TRIUR3_17277
N
0.460
PK22924.1
Cannabis sativa
PK22924.1
N
0.454
POPTR_0004s13630
Populus trichocarpa
POPTR_0004s13630
N
0.451
MDP0000143506
Malus domestica
MDP0000143506
N
0.447
Eucgr.D00306
Eucalyptus grandis
Eucgr.D00306
N
0.446
MDP0000695104
Malus domestica
MDP0000695104
N
0.446
PRUPE_ppa013152mg
Prunus persica
PRUPE_ppa013152mg
N
0.443
SapurV1A.0560s0060
Salix purpurea
SapurV1A.0560s0060
N
0.442
PDK_20s1781681g001
Phoenix dactylifera
PDK_20s1781681g001
N
0.442
AMTR_s00014p00061870
Amborella trichopoda
AMTR_s00014p00061870
N
0.439
Traes_7DL_0CEFCB39D
Triticum aestivum
Traes_7DL_0CEFCB39D
N
0.438
GLYMA05G25892
Glycine max
GLYMA05G25892
N
0.438
Traes_7AL_364A6E96F
Triticum aestivum
Traes_7AL_364A6E96F
N
0.438
Traes_7BL_F45C15FA2
Triticum aestivum
Traes_7BL_F45C15FA2
N
0.438
gene30574-v1.0-hybrid
Fragaria vesca
gene30574-v1.0-hybrid
N
0.428
Ca_05162
Cicer arietinum
Ca_05162
N
0.419
Ca_05164
Cicer arietinum
Ca_05164
N
0.419
GLYMA05G25900
Glycine max
GLYMA05G25900
N
0.417
GLYMA08G08840
Glycine max
GLYMA08G08840
N
0.417