cassava6450.valid.m1 (Manihot esculenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 cassava6450.valid.m1 T333946_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava6450.valid.m1 Sox 16 75

Links

Other Sox family TFs
Other Manihot esculenta TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29693.m002035 Ricinus communis 29693.m002035 N 0.496
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.439
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.505
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.468
Ca_05162 Cicer arietinum Ca_05162 N 0.419
Ca_05164 Cicer arietinum Ca_05164 N 0.419
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.488
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.446
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.428
GLYMA05G25892 Glycine max GLYMA05G25892 N 0.438
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.417
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.417
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.677
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.478
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.468
MDP0000143506 Malus domestica MDP0000143506 N 0.447
MDP0000695104 Malus domestica MDP0000695104 N 0.446
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.488
PDK_20s1781681g001 Phoenix dactylifera PDK_20s1781681g001 N 0.442
PK22924.1 Cannabis sativa PK22924.1 N 0.454
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.451
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.443
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.442
TCM_029514 Theobroma cacao TCM_029514 N 0.488
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.597
Traes_7AL_364A6E96F Triticum aestivum Traes_7AL_364A6E96F N 0.438
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.438
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N 0.438
TRIUR3_17277 Triticum urartu TRIUR3_17277 N 0.460