Cucsa.239250 (Cucumis sativus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cucsa.239250 T333953_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.239250.1 Sox 167 213

Links

Other Sox family TFs
Other Cucumis sativus TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla002005 Citrullus lanatus Cla002005 N 0.741
PK16821.1 Cannabis sativa PK16821.1 N 0.723
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.704
30116.m000393 Ricinus communis 30116.m000393 N 0.655
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.650
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.649
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.646
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.636
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.636
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.634
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.631
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.630
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.623
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.604
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.604
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.604
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.604
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.604
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.604
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.604
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.604
OBART02G34050 Oryza barthii OBART02G34050 N 0.604
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.604
OS02G0770600 Oryza sativa OS02G0770600 N 0.604
OB07G29110 Oryza brachyantha OB07G29110 N 0.604
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.604
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.604
Si017699m.g Setaria italica Si017699m.g N 0.604
OB02G40920 Oryza brachyantha OB02G40920 N 0.598
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.595
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.594
PK04394.1 Cannabis sativa PK04394.1 N 0.593
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.587
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.587
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.581
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.576
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.576
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.574
MDP0000634922 Malus domestica MDP0000634922 N 0.572
TCM_006422 Theobroma cacao TCM_006422 N 0.570
F775_20121 Aegilops tauschii F775_20121 N 0.566
mgf000387m Mimulus guttatus mgf000387m N 0.566
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.566
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.566
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.566
mgf013454m Mimulus guttatus mgf013454m N 0.566
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.564
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.555
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.525
MDP0000597087 Malus domestica MDP0000597087 N 0.520
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.517
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.489