CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.286190
(
Cucumis sativus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Cucsa.286190
T333956_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
INO
M02485_2.00
Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN
PBM
Weirauch et al.(2014)
pTH7516
0.615
0.691
CRC
M07266_2.00
Arabidopsis thaliana
TWATCATW
WATGATWA
Dap-seq
OMalley et al.(2016)
CRC_col_a
0.569
0.491
CRC
M07267_2.00
Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC
Dap-seq
OMalley et al.(2016)
CRC_colamp_a
0.569
0.491
YAB5
M02486_2.00
Arabidopsis thaliana
NNNNHRN
NYDNNNN
PBM
Weirauch et al.(2014)
pTH7575
0.547
0.545
YAB5
M00889_2.00
Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN
PBM
Franco-Zorrilla et al.(2014)
YAB5
0.547
0.545
YAB1
M00890_2.00
Arabidopsis thaliana
AATAATWA
TWATTATT
PBM
Franco-Zorrilla et al.(2014)
YAB1
0.547
0.527
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.286190.1
Sox
117
171
RQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNWANFPPIQEKDDKEKCN
Links
Other
Sox
family TFs
Other
Cucumis sativus
TFs
482 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy