e_gw1.34.410.1 (Physcomitrella patens)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 e_gw1.34.410.1 T333972_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.429 0.406
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.429 0.406
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.423 0.377
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.423 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.34.410.1 Sox 22 90

Links

Other Sox family TFs
Other Physcomitrella patens TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PHLGIDRAFT_113118 Phlebiopsis gigantea PHLGIDRAFT_113118 I 0.488
YALI0_C11671g Yarrowia lipolytica YALI0_C11671g I 0.485
estExt_fgeneshPB_pg.C_360007 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_360007 I 0.477
estExt_Genewise1.C_20300 Phycomyces blakesleeanus estExt_Genewise1.C_20300 I 0.477
RO3G_07751 Rhizopus oryzae RO3G_07751 I 0.477
NDAI_0A05290 Naumovozyma dairenensis NDAI_0A05290 I 0.477
estExt_Genewise1Plus.C_11422 Mucor circinelloides estExt_Genewise1Plus.C_11422 I 0.477
e_gw1.1.2450.1 Mucor circinelloides e_gw1.1.2450.1 I 0.464
fgenesh1_pg.C_scaffold_9000255 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_9000255 I 0.464
SEPMUDRAFT_150255 Sphaerulina musiva SEPMUDRAFT_150255 I 0.463
fgenesh1_pg.C_chr_2000123 Mycosphaerella graminicola fgenesh1_pg.C_chr_2000123 I 0.457
CANTEDRAFT_110112 Candida tenuis CANTEDRAFT_110112 I 0.457
Mycgr3G90433 Zymoseptoria tritici Mycgr3G90433 I 0.457
CAGL0H08541g Candida glabrata CAGL0H08541g I 0.455
PHACADRAFT_164552 Phanerochaete carnosa PHACADRAFT_164552 I 0.455
RO3G_04704 Rhizopus oryzae RO3G_04704 I 0.455
KAFR_0G01620 Kazachstania africana KAFR_0G01620 I 0.454
PV09_01265 Verruconis gallopava PV09_01265 I 0.451
L804_02852 Cryptococcus gattii L804_02852 I 0.450
CNF04730 Cryptococcus neoformans CNF04730 I 0.450
HPODL_03671 Ogataea parapolymorpha HPODL_03671 I 0.448
TPHA_0M01480 Tetrapisispora phaffii TPHA_0M01480 I 0.448
KUCA_T00001555001 Kuraishia capsulata KUCA_T00001555001 I 0.448
ANIA_02885 Aspergillus nidulans CADANIAG00010204 I 0.447
SELMODRAFT_29503 Selaginella moellendorffii SELMODRAFT_29503 I 0.445
CD36_41610 Candida dubliniensis CD36_41610 I 0.445
SELMODRAFT_8183 Selaginella moellendorffii SELMODRAFT_8183 I 0.445
KLLA0_B12056g Kluyveromyces lactis KLLA0_B12056g I 0.443
LALA0_S09e03686g Lachancea lanzarotensis LALA0_S09e03686g I 0.443
Kwal_12539 Kluyveromyces waltii Kwal_12539 I 0.443
FOMPIDRAFT_1026139 Fomitopsis pinicola FOMPIDRAFT_1026139 I 0.441
LELG_04337 Lodderomyces elongisporus LELG_04337 I 0.438
gww1.1.1.1342.1 Pichia stipitis gww1.1.1.1342.1 I 0.438
CPAG_02417 Candida parapsilosis CPAG_02417 I 0.438
SPAPADRAFT_62621 Spathaspora passalidarum SPAPADRAFT_62621 I 0.438
PICST_23779 Scheffersomyces stipitis PICST_23779 I 0.438
GNLVRS01_PISO0M04390g Millerozyma farinosa GNLVRS01_PISO0M04390g I 0.438
CORT_0E02670 Candida orthopsilosis CORT_0E02670 I 0.438
GNLVRS01_PISO0N04523g Millerozyma farinosa GNLVRS01_PISO0N04523g I 0.438
G210_1137 Candida maltosa G210_1137 I 0.438
TBLA_0I02240 Tetrapisispora blattae TBLA_0I02240 I 0.436
ZYRO0C15752g Zygosaccharomyces rouxii ZYRO0C15752g I 0.436
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I 0.436
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I 0.436
ZBAI_05520 Zygosaccharomyces bailii ZBAI_05520 I 0.436
TDEL_0C04750 Torulaspora delbrueckii TDEL_0C04750 I 0.436
Kpol_376p1 Vanderwaltozyma polyspora Kpol_376p1 I 0.436
ZBAI_00368 Zygosaccharomyces bailii ZBAI_00368 I 0.436
Kpol_1065p34 Vanderwaltozyma polyspora Kpol_1065p34 I 0.436
TPHA_0A03740 Tetrapisispora phaffii TPHA_0A03740 I 0.436
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I 0.436
FIBRA_06299 Fibroporia radiculosa FIBRA_06299 I 0.436
PGUG_05245 Candida guilliermondii PGUG_05245 I 0.434
PGUG_05245 Meyerozyma guilliermondii PGUG_05245 I 0.434
M438DRAFT_311243 Aureobasidium pullulans M438DRAFT_311243 I 0.434
AUEXF2481DRAFT_68224 Aureobasidium subglaciale AUEXF2481DRAFT_68224 I 0.434
A1O3_03664 Capronia epimyces A1O3_03664 I 0.433
PHSY_006278 Pseudozyma hubeiensis PHSY_006278 I 0.432
DEHA2D17710g Debaryomyces hansenii DEHA2D17710g I 0.431
22477_YPR052C Saccharomyces mikatae 22477_YPR052C I 0.429
Scas_Contig718.17 Saccharomyces castellii Scas_Contig718.17 I 0.429
25751_YPR052C Saccharomyces bayanus 25751_YPR052C I 0.429
NHP6A Saccharomyces cerevisiae YPR052C D 0.429
KLTH0E14850g Kluyveromyces thermotolerans KLTH0E14850g I 0.429
NCAS_0I01260 Naumovozyma castellii NCAS_0I01260 I 0.429
SU7_3651 Saccharomyces arboricola SU7_3651 I 0.429
GLOINDRAFT_339088 Rhizophagus irregularis GLOINDRAFT_339088 I 0.429
SKUD_180604 Saccharomyces kudriavzevii SKUD_180604 I 0.429
M437DRAFT_40541 Aureobasidium melanogenum M437DRAFT_40541 I 0.429
KLTH0E14850g Lachancea thermotolerans KLTH0E14850g I 0.429
SAKL0B07150g Lachancea kluyveri SAKL0B07150g I 0.429
BN946_scf184999.g62 Trametes cinnabarina BN946_scf184999.g62 I 0.428
CERSUDRAFT_85760 Ceriporiopsis subvermispora CERSUDRAFT_85760 I 0.428
DICSQDRAFT_109066 Dichomitus squalens DICSQDRAFT_109066 I 0.428
DOTSEDRAFT_74007 Dothistroma septosporum DOTSEDRAFT_74007 I 0.427
MDP0000301546 Malus domestica MDP0000301546 I 0.427
MDP0000828844 Malus domestica MDP0000828844 I 0.427
PK18077.1 Cannabis sativa PK18077.1 I 0.427
Pm015842 Prunus mume Pm015842 I 0.427
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.427
TCM_018380 Theobroma cacao TCM_018380 I 0.427
Ca_10804 Cicer arietinum Ca_10804 I 0.426
MDP0000310093 Malus domestica MDP0000310093 I 0.425
mgf001267m Mimulus guttatus mgf001267m I 0.425
M378DRAFT_77996 Amanita muscaria M378DRAFT_77996 I 0.424
Scas_Contig667.17 Saccharomyces castellii Scas_Contig667.17 I 0.423
906_YBR089C-A Saccharomyces mikatae 906_YBR089C-A I 0.423
NCAS_0A11010 Naumovozyma castellii NCAS_0A11010 I 0.423
1377_YBR089C-A Saccharomyces paradoxus 1377_YBR089C-A I 0.423
2032_YBR089C-A Saccharomyces bayanus 2032_YBR089C-A I 0.423
MYCFIDRAFT_57980 Pseudocercospora fijiensis MYCFIDRAFT_57980 I 0.423
SU7_0186 Saccharomyces arboricola SU7_0186 I 0.423
NHP6B Saccharomyces cerevisiae YBR089C-A D 0.423
estExt_Genewise1Plus.C_80270 Mycosphaerella fijiensis estExt_Genewise1Plus.C_80270 I 0.423
KNAG_0H00800 Kazachstania naganishii KNAG_0H00800 I 0.423
SKUD_201106 Saccharomyces kudriavzevii SKUD_201106 I 0.423
MELLADRAFT_31192 Melampsora laricipopulina MELLADRAFT_31192 I 0.422
A1Q1_01571 Trichosporon asahii A1Q1_01571 I 0.420
UHOR_03854 Ustilago hordei UHOR_03854 I 0.418
AGABI2DRAFT_56560 Agaricus bisporus AGABI2DRAFT_56560 I 0.418
SCHCODRAFT_76744 Schizophyllum commune SCHCODRAFT_76744 I 0.418
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.417
Cla017295 Citrullus lanatus Cla017295 I 0.417
Ca_12487 Cicer arietinum Ca_12487 I 0.417
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.417
JL09_g4180 Pichia kudriavzevii JL09_g4180 I 0.417
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.417