estExt_fgenesh2_pg.C_2300014 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_fgenesh2_pg.C_2300014 T334019_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmg20b
M02487_2.00
Mus musculus
NNATTATWHWN

NWDWATAATNN
PBM
Weirauch et al.(2014)
pTH8555
0.626 0.725
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_2300014 Sox 125 193

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_22558 Aegilops tauschii F775_22558 N 0.000
MDP0000598367 Malus domestica MDP0000598367 N 0.000
OB09G17750 Oryza brachyantha OB09G17750 N 0.000
SELMODRAFT_39509 Selaginella moellendorffii SELMODRAFT_39509 N 0.000
TRIUR3_11737 Triticum urartu TRIUR3_11737 N 0.000