estExt_fgeneshDP_kg.C_1050006 (Dictyostelium purpureum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_fgeneshDP_kg.C_1050006 T334048_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.458 0.449
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.458 0.449
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.458 0.449
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.458 0.449
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgeneshDP_kg.C_1050006 Sox 54 122

Links

Other Sox family TFs
Other Dictyostelium purpureum TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.204.1.1 Dictyostelium purpureum gw1.204.1.1 I 0.710
fgeneshDP_kg.C_scaffold_93000006 Dictyostelium purpureum fgeneshDP_kg.C_scaffold_93000006 I 0.680
fgeneshDP_kg.C_scaffold_625000001 Dictyostelium purpureum fgeneshDP_kg.C_scaffold_625000001 I 0.650
EFA82179.1 Polysphondylium pallidum EFA82179.1 I 0.626
nhp6 Dictyostelium discoideum DDB_G0270260 N 0.538
PGTG_04701 Puccinia graminis PGTG_04701 I 0.511
WALSEDRAFT_53977 Wallemia sebi WALSEDRAFT_53977 I 0.508
PTTG_09594 Puccinia triticina PTTG_09594 I 0.504
J056_004689 Wallemia ichthyophaga J056_004689 I 0.500
nhp6 Schizosaccharomyces pombe SPAC57A10.09c I 0.498
KNAG_0H00800 Kazachstania naganishii KNAG_0H00800 I 0.497
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.492
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.492
MVLG_07162 Microbotryum violaceum MVLG_07162 I 0.486
KAFR_0G01620 Kazachstania africana KAFR_0G01620 I 0.484
Scas_Contig667.17 Saccharomyces castellii Scas_Contig667.17 I 0.483
NCAS_0A11010 Naumovozyma castellii NCAS_0A11010 I 0.483
DACRYDRAFT_23197 Dacryopinax sp DACRYDRAFT_23197 I 0.483
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.480
CAGL0H08541g Candida glabrata CAGL0H08541g I 0.477
MELLADRAFT_31192 Melampsora laricipopulina MELLADRAFT_31192 I 0.474
NDAI_0A05290 Naumovozyma dairenensis NDAI_0A05290 I 0.473
fgenesh1_pg.C_scaffold_9000255 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_9000255 I 0.471
M407DRAFT_81488 Tulasnella calospora M407DRAFT_81488 I 0.471
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.469
SJAG_03603 Schizosaccharomyces japonicus SJAG_03603 I 0.467
PHLGIDRAFT_113118 Phlebiopsis gigantea PHLGIDRAFT_113118 I 0.466
TBLA_0I02240 Tetrapisispora blattae TBLA_0I02240 I 0.465
KLTH0E14850g Kluyveromyces thermotolerans KLTH0E14850g I 0.465
KLTH0E14850g Lachancea thermotolerans KLTH0E14850g I 0.465
TCM_018380 Theobroma cacao TCM_018380 I 0.462
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.460
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.460
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.460
Mycgr3G90433 Zymoseptoria tritici Mycgr3G90433 I 0.458
TDEL_0C04750 Torulaspora delbrueckii TDEL_0C04750 I 0.458
SKUD_201106 Saccharomyces kudriavzevii SKUD_201106 I 0.458
NHP6B Saccharomyces cerevisiae YBR089C-A D 0.458
PHSY_006278 Pseudozyma hubeiensis PHSY_006278 I 0.458
KLLA0_B12056g Kluyveromyces lactis KLLA0_B12056g I 0.458
ZBAI_05520 Zygosaccharomyces bailii ZBAI_05520 I 0.458
ZBAI_00368 Zygosaccharomyces bailii ZBAI_00368 I 0.458
LELG_04337 Lodderomyces elongisporus LELG_04337 I 0.458
ZYRO0C15752g Zygosaccharomyces rouxii ZYRO0C15752g I 0.458
NHP6A Saccharomyces cerevisiae YPR052C D 0.458
LALA0_S09e03686g Lachancea lanzarotensis LALA0_S09e03686g I 0.458
fgenesh1_pg.C_chr_2000123 Mycosphaerella graminicola fgenesh1_pg.C_chr_2000123 I 0.458
25751_YPR052C Saccharomyces bayanus 25751_YPR052C I 0.458
906_YBR089C-A Saccharomyces mikatae 906_YBR089C-A I 0.458
22477_YPR052C Saccharomyces mikatae 22477_YPR052C I 0.458
2032_YBR089C-A Saccharomyces bayanus 2032_YBR089C-A I 0.458
1377_YBR089C-A Saccharomyces paradoxus 1377_YBR089C-A I 0.458
G210_1137 Candida maltosa G210_1137 I 0.458
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.458
SU7_0186 Saccharomyces arboricola SU7_0186 I 0.458
SAKL0B07150g Lachancea kluyveri SAKL0B07150g I 0.458
SKUD_180604 Saccharomyces kudriavzevii SKUD_180604 I 0.458
Kwal_12539 Kluyveromyces waltii Kwal_12539 I 0.458
SU7_3651 Saccharomyces arboricola SU7_3651 I 0.458
BATDEDRAFT_89692 Batrachochytrium dendrobatidis BATDEDRAFT_89692 I 0.454
PK18077.1 Cannabis sativa PK18077.1 I 0.452
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.452
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.452
MDP0000828844 Malus domestica MDP0000828844 I 0.452
Pm015842 Prunus mume Pm015842 I 0.452
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.452
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.452
gw1.32.10.1 Bigelowiella natans gw1.32.10.1 N 0.451
PILCRDRAFT_812728 Piloderma croceum PILCRDRAFT_812728 I 0.450
MDP0000310093 Malus domestica MDP0000310093 I 0.450
M378DRAFT_77996 Amanita muscaria M378DRAFT_77996 I 0.450
JAAARDRAFT_49184 Jaapia argillacea JAAARDRAFT_49184 I 0.450
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.449
TPHA_0A03740 Tetrapisispora phaffii TPHA_0A03740 I 0.449
Kpol_1065p34 Vanderwaltozyma polyspora Kpol_1065p34 I 0.449
estExt_Genewise1Plus.C_11422 Mucor circinelloides estExt_Genewise1Plus.C_11422 I 0.449
PHACADRAFT_164552 Phanerochaete carnosa PHACADRAFT_164552 I 0.448
estExt_Genewise1.C_510099 Volvox carteri estExt_Genewise1.C_510099 N 0.446
KNAG_0J02470 Kazachstania naganishii KNAG_0J02470 I 0.446
gw1.199.74.1 Physcomitrella patens gw1.199.74.1 I 0.446
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.445
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.445
mgf001267m Mimulus guttatus mgf001267m I 0.443
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.442
HPODL_03671 Ogataea parapolymorpha HPODL_03671 I 0.442
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.442
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.442
estExt_Genewise1.C_20300 Phycomyces blakesleeanus estExt_Genewise1.C_20300 I 0.442
KUCA_T00001555001 Kuraishia capsulata KUCA_T00001555001 I 0.442
Ca_10804 Cicer arietinum Ca_10804 I 0.442
TPHA_0M01480 Tetrapisispora phaffii TPHA_0M01480 I 0.442
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.442
M422DRAFT_60408 Sphaerobolus stellatus M422DRAFT_60408 I 0.442
Ca_12487 Cicer arietinum Ca_12487 I 0.442
Cla017295 Citrullus lanatus Cla017295 I 0.442
M422DRAFT_51665 Sphaerobolus stellatus M422DRAFT_51665 I 0.442
PSEUBRA_SCAF4g05002 Pseudozyma brasiliensis PSEUBRA_SCAF4g05002 I 0.440
PaG_04789 Pseudozyma aphidis PaG_04789 I 0.440
PAN0_004d2231 Pseudozyma antarctica PAN0_004d2231 I 0.440
UM02364 Ustilago maydis UM02364 I 0.440
MSY001_2636 Malassezia sympodialis MSY001_2636 I 0.440
PNEG_03347 Pneumocystis murina PNEG_03347 I 0.439
Bra033055 Brassica rapa Bra033055 N 0.438
DOTSEDRAFT_74007 Dothistroma septosporum DOTSEDRAFT_74007 I 0.437
SOCG_02294 Schizosaccharomyces octosporus SOCG_02294 I 0.437
FOMPIDRAFT_1026139 Fomitopsis pinicola FOMPIDRAFT_1026139 I 0.436
gw1.9.300.1 Sporobolomyces roseus gw1.9.300.1 I 0.435
FIBRA_06299 Fibroporia radiculosa FIBRA_06299 I 0.435
DICSQDRAFT_109066 Dichomitus squalens DICSQDRAFT_109066 I 0.435
RHTO_03328 Rhodosporidium toruloides RHTO_03328 I 0.435
CERSUDRAFT_85760 Ceriporiopsis subvermispora CERSUDRAFT_85760 I 0.435
BN946_scf184999.g62 Trametes cinnabarina BN946_scf184999.g62 I 0.435
MCYG_05548 Arthroderma otae MCYG_05548 I 0.434
MGG_04489 Magnaporthe oryzae MGG_04489 I 0.434
H102_01953 Trichophyton rubrum H102_01953 I 0.434
L804_02852 Cryptococcus gattii L804_02852 I 0.434
H105_01968 Trichophyton soudanense H105_01968 I 0.434
SMAC_04223 Sordaria macrospora SMAC_04223 I 0.434
ARB_02895 Arthroderma benhamiae ARB_02895 I 0.434
TESG_06912 Trichophyton tonsurans TESG_06912 I 0.434
ATEG_04695 Aspergillus terreus CADATEAG00010213 I 0.434
MCYG_05548 Microsporum canis MCYG_05548 I 0.434
CNF04730 Cryptococcus neoformans CNF04730 I 0.434
PDE_04795 Penicillium oxalicum PDE_04795 I 0.434
TRV_07738 Trichophyton verrucosum TRV_07738 I 0.434
SPOG_00531 Schizosaccharomyces cryophilus SPOG_00531 I 0.434
AUEXF2481DRAFT_68224 Aureobasidium subglaciale AUEXF2481DRAFT_68224 I 0.431
29701.m000600 Ricinus communis 29701.m000600 I 0.431
M437DRAFT_40541 Aureobasidium melanogenum M437DRAFT_40541 I 0.431
estExt_Genewise1Plus.C_80270 Mycosphaerella fijiensis estExt_Genewise1Plus.C_80270 I 0.431
M438DRAFT_311243 Aureobasidium pullulans M438DRAFT_311243 I 0.431
MYCFIDRAFT_57980 Pseudocercospora fijiensis MYCFIDRAFT_57980 I 0.431
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I 0.430
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I 0.430
CORT_0E02670 Candida orthopsilosis CORT_0E02670 I 0.430
GNLVRS01_PISO0N04523g Millerozyma farinosa GNLVRS01_PISO0N04523g I 0.430
CPAG_02417 Candida parapsilosis CPAG_02417 I 0.430
sr13567 Sporisorium reilianum sr13567 I 0.430
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I 0.430
Scas_Contig718.17 Saccharomyces castellii Scas_Contig718.17 I 0.429
NCAS_0I01260 Naumovozyma castellii NCAS_0I01260 I 0.429
H072_4754 Dactylellina haptotyla H072_4754 I 0.427
PredSwiss_ASS2010_160.1 Pneumocystis carinii PredSwiss_ASS2010_160.1 I 0.427
SAPIO_CDS3210 Scedosporium apiospermum SAPIO_CDS3210 I 0.427
SBOR_5988 Sclerotinia borealis SBOR_5988 I 0.427
MGYG_02637 Microsporum gypseum MGYG_02637 I 0.427
MDP0000301546 Malus domestica MDP0000301546 I 0.427
F503_07006 Ophiostoma piceae uamh F503_07006 I 0.427
MBM_05761 Marssonina brunnea MBM_05761 I 0.427
SCHCODRAFT_76744 Schizophyllum commune SCHCODRAFT_76744 I 0.425
gww1.1.1.1342.1 Pichia stipitis gww1.1.1.1342.1 I 0.424
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.424
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.424
GNLVRS01_PISO0M04390g Millerozyma farinosa GNLVRS01_PISO0M04390g I 0.424
Kpol_376p1 Vanderwaltozyma polyspora Kpol_376p1 I 0.424
SPAPADRAFT_62621 Spathaspora passalidarum SPAPADRAFT_62621 I 0.424
CD36_41610 Candida dubliniensis CD36_41610 I 0.424
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.424
Pm002934 Prunus mume Pm002934 I 0.424
DEHA2D17710g Debaryomyces hansenii DEHA2D17710g I 0.424
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.424
PICST_23779 Scheffersomyces stipitis PICST_23779 I 0.424
e_gw1.7.444.1 Tremella mesenterica e_gw1.7.444.1 I 0.422
RO3G_07751 Rhizopus oryzae RO3G_07751 I 0.421
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.419
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.419
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.419
SSRP1 Arabidopsis thaliana AT3G28730 I 0.419
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.419
E5Q_00406 Mixia osmundae E5Q_00406 I 0.418
PK11149.1 Cannabis sativa PK11149.1 I 0.418
GALMADRAFT_227783 Galerina marginata GALMADRAFT_227783 I 0.417
Moror_35 Moniliophthora roreri Moror_35 I 0.417
PLICRDRAFT_46399 Plicaturopsis crispa PLICRDRAFT_46399 I 0.417
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.417
M413DRAFT_45791 Hebeloma cylindrosporum M413DRAFT_45791 I 0.417
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.417
GLOTRDRAFT_99857 Gloeophyllum trabeum GLOTRDRAFT_99857 I 0.417
A1Q1_01571 Trichosporon asahii A1Q1_01571 I 0.416