estExt_Genewise1.C_10428 (Volvox carteri)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_Genewise1.C_10428 T334062_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_10428 Sox 81 149

Links

Other Sox family TFs
Other Volvox carteri TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CHLREDRAFT_142283 Chlamydomonas reinhardtii CHLREDRAFT_142283 N 0.637
estExt_Genewise1.C_510099 Volvox carteri estExt_Genewise1.C_510099 N 0.608
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.590
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.590
Bra033055 Brassica rapa Bra033055 N 0.524
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.520
29822.m003476 Ricinus communis 29822.m003476 I 0.520
O9G_002262 Rozella allomycis O9G_002262 I 0.506
gw.283.36.1 Branchiostoma floridae gw.283.36.1 N 0.496
gw.77.73.1 Branchiostoma floridae gw.77.73.1 N 0.496
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.495
M407DRAFT_81488 Tulasnella calospora M407DRAFT_81488 I 0.485
Aquca_002_00505 Aquilegia coerulea Aquca_002_00505 I 0.485
BOTBODRAFT_30512 Botryobasidium botryosum BOTBODRAFT_30512 N 0.482
PK18077.1 Cannabis sativa PK18077.1 I 0.480
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.474
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.474
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.474
GUITHDRAFT_76406 Guillardia theta GUITHDRAFT_76406 N 0.473
GUITHDRAFT_114564 Guillardia theta GUITHDRAFT_114564 N 0.473
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.472
Ca_10804 Cicer arietinum Ca_10804 I 0.472
Ca_12487 Cicer arietinum Ca_12487 I 0.472
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.472
GLYMA03G03771 Glycine max GLYMA03G03771 N 0.471
gw1.32.10.1 Bigelowiella natans gw1.32.10.1 N 0.471
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.470
Lus10042065.g Linum usitatissimum Lus10042065.g N 0.467
Lus10018073.g Linum usitatissimum Lus10018073.g N 0.467
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.466
mgf001267m Mimulus guttatus mgf001267m I 0.465
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.461
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.459
GUITHDRAFT_115609 Guillardia theta GUITHDRAFT_115609 N 0.455
MDP0000828844 Malus domestica MDP0000828844 I 0.454
OSTLU_19125 Ostreococcus lucimarinus OSTLU_19125 N 0.454
Kpol_1065p34 Vanderwaltozyma polyspora Kpol_1065p34 I 0.453
BATDEDRAFT_89692 Batrachochytrium dendrobatidis BATDEDRAFT_89692 I 0.451
Cla017295 Citrullus lanatus Cla017295 I 0.450
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.450
gw1.199.74.1 Physcomitrella patens gw1.199.74.1 I 0.449
MDP0000310093 Malus domestica MDP0000310093 I 0.449
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.448
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.448
Pm015842 Prunus mume Pm015842 I 0.448
TCM_018380 Theobroma cacao TCM_018380 I 0.448
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.448
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.437
MVLG_07162 Microbotryum violaceum MVLG_07162 I 0.436
Bra025350 Brassica rapa Bra025350 N 0.432
Bo7g091510 Brassica oleracea Bo7g091510 N 0.432
SOCG_02294 Schizosaccharomyces octosporus SOCG_02294 I 0.431
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I 0.428
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I 0.428
Kpol_376p1 Vanderwaltozyma polyspora Kpol_376p1 I 0.428
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I 0.428
OB01G34910 Oryza brachyantha OB01G34910 I 0.427
NCAS_0A11010 Naumovozyma castellii NCAS_0A11010 I 0.426
TPHA_0A03740 Tetrapisispora phaffii TPHA_0A03740 I 0.426
Scas_Contig667.17 Saccharomyces castellii Scas_Contig667.17 I 0.426
K437DRAFT_218621 Tilletiaria anomala K437DRAFT_218621 N 0.425
CHLREDRAFT_189879 Chlamydomonas reinhardtii CHLREDRAFT_189879 N 0.424
MDP0000301546 Malus domestica MDP0000301546 I 0.423
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.421
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.421
SSRP1 Arabidopsis thaliana AT3G28730 I 0.418
mgf024995m Mimulus guttatus mgf024995m I 0.418
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.418
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.418
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.418