CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_Genewise1.C_510099
(
Volvox carteri
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
estExt_Genewise1.C_510099
T334066_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_510099
Sox
555
623
PKKNLTGFMYFSNANREKVKAENPGIAFGEIGKMLGERWKGMGADEKAPYEQMAAKDKVRYAEAMKAYK
Links
Other
Sox
family TFs
Other
Volvox carteri
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CHLREDRAFT_142283
Chlamydomonas reinhardtii
CHLREDRAFT_142283
N
0.613
estExt_Genewise1.C_10428
Volvox carteri
estExt_Genewise1.C_10428
N
0.608
29822.m003476
Ricinus communis
29822.m003476
I
0.547
cassava42041.valid.m1
Manihot esculenta
cassava42041.valid.m1
I
0.539
Bra033055
Brassica rapa
Bra033055
N
0.534
PDK_20s1437671g003
Phoenix dactylifera
PDK_20s1437671g003
I
0.518
Solyc02g087710.2
Solanum lycopersicum
Solyc02g087710.2
I
0.509
PGSC0003DMG400001414
Solanum tuberosum
PGSC0003DMG400001414
I
0.509
Aquca_002_00505
Aquilegia coerulea
Aquca_002_00505
I
0.505
estExt_fgenesh1_pm.C_130068
Coccomyxa subellipsoidea C169
estExt_fgenesh1_pm.C_130068
I
0.501
estExt_Genewise1.C_130158
Chlorella vulgaris
estExt_Genewise1.C_130158
I
0.501
PGSC0003DMG400018099
Solanum tuberosum
PGSC0003DMG400018099
I
0.496
gw1.32.10.1
Bigelowiella natans
gw1.32.10.1
N
0.485
GSMUA_Achr2G19630_001
Musa acuminata
GSMUA_Achr2G19630_001
I
0.484
BOTBODRAFT_30512
Botryobasidium botryosum
BOTBODRAFT_30512
N
0.478
Bostr.0556s0524
Boechera stricta
Bostr.0556s0524
I
0.471
PRUPE_ppa002690mg
Prunus persica
PRUPE_ppa002690mg
I
0.467
TCM_018380
Theobroma cacao
TCM_018380
I
0.467
Pm015842
Prunus mume
Pm015842
I
0.467
SPPG_05251
Spizellomyces punctatus
SPPG_05251
I
0.466
MDP0000828844
Malus domestica
MDP0000828844
I
0.466
MDP0000310093
Malus domestica
MDP0000310093
I
0.463
ATHMG
Arabidopsis lyrata
scaffold_500854.1
I
0.460
CHLREDRAFT_189879
Chlamydomonas reinhardtii
CHLREDRAFT_189879
N
0.458
GUITHDRAFT_114564
Guillardia theta
GUITHDRAFT_114564
N
0.458
GUITHDRAFT_76406
Guillardia theta
GUITHDRAFT_76406
N
0.458
AMTR_s00078p00107740
Amborella trichopoda
AMTR_s00078p00107740
I
0.455
GUITHDRAFT_115609
Guillardia theta
GUITHDRAFT_115609
N
0.454
MDP0000301546
Malus domestica
MDP0000301546
I
0.446
estExt_fgeneshDP_kg.C_1050006
Dictyostelium purpureum
estExt_fgeneshDP_kg.C_1050006
I
0.446
gw1.204.1.1
Dictyostelium purpureum
gw1.204.1.1
I
0.442
mgf001267m
Mimulus guttatus
mgf001267m
I
0.435
gene01265-v1.0-hybrid
Fragaria vesca
gene01265-v1.0-hybrid
I
0.434
evm.TU.supercontig_211.6
Carica papaya
evm.TU.supercontig_211.6
I
0.434
Lus10018073.g
Linum usitatissimum
Lus10018073.g
N
0.432
Lus10042065.g
Linum usitatissimum
Lus10042065.g
N
0.432
SSRP1
Arabidopsis thaliana
AT3G28730
I
0.430
PK18077.1
Cannabis sativa
PK18077.1
I
0.430
Carubv10016819m.g
Capsella rubella
Carubv10016819m.g
I
0.430
Cagra.0535s0005
Capsella grandiflora
Cagra.0535s0005
I
0.430
OSTLU_19125
Ostreococcus lucimarinus
OSTLU_19125
N
0.429
Cucsa.339070
Cucumis sativus
Cucsa.339070
I
0.428
Cla017295
Citrullus lanatus
Cla017295
I
0.428
gw.283.36.1
Branchiostoma floridae
gw.283.36.1
N
0.428
gw.77.73.1
Branchiostoma floridae
gw.77.73.1
N
0.428
Thhalv10003803m.g
Eutrema salsugineum
Thhalv10003803m.g
I
0.426
ATHMG
Vitis vinifera
VIT_14s0108g00040
I
0.424
SOCG_02294
Schizosaccharomyces octosporus
SOCG_02294
I
0.424
Ca_10804
Cicer arietinum
Ca_10804
I
0.422
LjSGA_094514.1
Lotus japonicus
LjSGA_094514.1
I
0.422
chr2.CM0225.40.nc
Lotus japonicus
chr2.CM0225.40.nc
I
0.422
O9G_002262
Rozella allomycis
O9G_002262
I
0.422
Ca_12487
Cicer arietinum
Ca_12487
I
0.422
GLYMA03G03771
Glycine max
GLYMA03G03771
N
0.422
Si003021m.g
Setaria italica
Si003021m.g
N
0.419
BRADI2G45927
Brachypodium distachyon
BRADI2G45927
I
0.419
Ciclev10011266m.g
Citrus clementina
Ciclev10011266m.g
I
0.418
orange1.1g006512m.g
Citrus sinensis
orange1.1g006512m.g
I
0.418
K437DRAFT_218621
Tilletiaria anomala
K437DRAFT_218621
N
0.415