estExt_Genewise1Plus.C_21097 (Fragilariopsis cylindrus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_Genewise1Plus.C_21097 T334071_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_21097 Sox 26 94
estExt_Genewise1Plus.C_21097 Sox 111 179

Links

Other Sox family TFs
Other Fragilariopsis cylindrus TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh_masked-pag1_scaffold_35-abinit-gene-0.129 Pythium aphanidermatum fgenesh_masked-pag1_scaffold_35-abinit-gene-0.129 N 0.451
Phatr3_J6025 Phaeodactylum tricornutum Phatr3_J6025 N 0.450
maker-par_contig_1203-snap-gene-0.8 Pythium arrhenomanes maker-par_contig_1203-snap-gene-0.8 N 0.448
ALNC14_018350 Albugo laibachii ALNC14_018350 N 0.445
maker-pve_contig_787-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_787-fgenesh-gene-0.0 N 0.432
SPRG_08822 Saprolegnia parasitica SPRG_08822 N 0.425
PYU1_G009116 Pythium ultimum PYU1_G009116 N 0.425
estExt_fgenesh1_kg.C_50989 Phytophthora capsici estExt_fgenesh1_kg.C_50989 N 0.425
F443_13786 Phytophthora parasitica F443_13786 N 0.425
fgenesh_scip_prom.46568.3800 Phytophthora kernoviae fgenesh_scip_prom.46568.3800 N 0.425
Physo142322 Phytophthora sojae Physo142322 N 0.421
maker-pir_contig_878-fgenesh-gene-0.5 Pythium irregulare maker-pir_contig_878-fgenesh-gene-0.5 N 0.421
Phyra84677 Phytophthora ramorum Phyra84677 N 0.421
HpaG804287 Hyaloperonospora arabidopsidis HpaG804287 N 0.421
maker-piw_contig_2474-fgenesh-gene-0.2 Pythium iwayamai maker-piw_contig_2474-fgenesh-gene-0.2 N 0.418