EuGene.0000050349 (Micromonas pusilla)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 EuGene.0000050349 T334084_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.420 0.509
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.420 0.509
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.420 0.473
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.420 0.473
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EuGene.0000050349 Sox 510 564

Links

Other Sox family TFs
Other Micromonas pusilla TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EuGene.0000010567 Micromonas pusilla EuGene.0000010567 N 0.675
est_cluster_kg.Chr_07__66__3199198:1 Micromonas sp RCC299 est_cluster_kg.Chr_07__66__3199198:1 N 0.646
EMIHUDRAFT_434306 Emiliania huxleyi EMIHUDRAFT_434306 N 0.638
PNEG_03347 Pneumocystis murina PNEG_03347 I 0.572
BGHDH14_bgh06194 Blumeria graminis BGHDH14_bgh06194 I 0.553
SELMODRAFT_29503 Selaginella moellendorffii SELMODRAFT_29503 I 0.509
SELMODRAFT_8183 Selaginella moellendorffii SELMODRAFT_8183 I 0.498
23225_YPR052C Saccharomyces paradoxus 23225_YPR052C I 0.491
gw1.1.1099.1 Micromonas pusilla gw1.1.1099.1 N 0.472
ISCW005293 Ixodes scapularis ISCW005293 N 0.457
SNAPOd2T00002710001 Oikopleura dioica SNAPOd2T00002710001 I 0.455
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.447
Bm12451 Brugia malayi Bm12451 N 0.445
TELCIR_19210 Teladorsagia circumcincta TELCIR_19210 N 0.444
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.444
TELCIR_25179 Teladorsagia circumcincta TELCIR_25179 N 0.444
ISCW008318 Ixodes scapularis ISCW008318 N 0.441
gw1.1.800.1 Fragilariopsis cylindrus gw1.1.800.1 N 0.439
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.439
TCM_018380 Theobroma cacao TCM_018380 I 0.431
TBLA_0I02240 Tetrapisispora blattae TBLA_0I02240 I 0.427
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.424
2032_YBR089C-A Saccharomyces bayanus 2032_YBR089C-A I 0.420
KLTH0E14850g Kluyveromyces thermotolerans KLTH0E14850g I 0.420
Kwal_12539 Kluyveromyces waltii Kwal_12539 I 0.420
SAKL0B07150g Lachancea kluyveri SAKL0B07150g I 0.420
906_YBR089C-A Saccharomyces mikatae 906_YBR089C-A I 0.420
25751_YPR052C Saccharomyces bayanus 25751_YPR052C I 0.420
1377_YBR089C-A Saccharomyces paradoxus 1377_YBR089C-A I 0.420
22477_YPR052C Saccharomyces mikatae 22477_YPR052C I 0.420
Scas_Contig667.17 Saccharomyces castellii Scas_Contig667.17 I 0.420
NHP6B Saccharomyces cerevisiae YBR089C-A D 0.420
LELG_04337 Lodderomyces elongisporus LELG_04337 I 0.420
NCAS_0A11010 Naumovozyma castellii NCAS_0A11010 I 0.420
scaffold_600397.1 Arabidopsis lyrata scaffold_600397.1 I 0.420
LALA0_S09e03686g Lachancea lanzarotensis LALA0_S09e03686g I 0.420
KLTH0E14850g Lachancea thermotolerans KLTH0E14850g I 0.420
EMIHUDRAFT_252069 Emiliania huxleyi EMIHUDRAFT_252069 N 0.420
G210_1137 Candida maltosa G210_1137 I 0.420
KLLA0_B12056g Kluyveromyces lactis KLLA0_B12056g I 0.420
SKUD_201106 Saccharomyces kudriavzevii SKUD_201106 I 0.420
SKUD_180604 Saccharomyces kudriavzevii SKUD_180604 I 0.420
ZBAI_00368 Zygosaccharomyces bailii ZBAI_00368 I 0.420
ZBAI_05520 Zygosaccharomyces bailii ZBAI_05520 I 0.420
ZYRO0C15752g Zygosaccharomyces rouxii ZYRO0C15752g I 0.420
SU7_0186 Saccharomyces arboricola SU7_0186 I 0.420
NHP6A Saccharomyces cerevisiae YPR052C D 0.420
TDEL_0C04750 Torulaspora delbrueckii TDEL_0C04750 I 0.420
SU7_3651 Saccharomyces arboricola SU7_3651 I 0.420
PICST_23779 Scheffersomyces stipitis PICST_23779 I 0.419
gww1.1.1.1342.1 Pichia stipitis gww1.1.1.1342.1 I 0.419
M404DRAFT_63984 Pisolithus tinctorius M404DRAFT_63984 I 0.416
Hsal_06265--XP_624018.2_APIME Harpegnathos saltator Hsal_06265--XP_624018.2_APIME N 0.415
TOX2 Sorex araneus ENSSARG00000001080 N 0.415
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N 0.415
ENSTGUG00000014902 Taeniopygia guttata ENSTGUG00000014902 N 0.415