fgenesh1_pg.chr_5_#_192 (Ostreococcus RCC809)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh1_pg.chr_5_#_192 T334094_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.chr_5_#_192 Sox 82 127

Links

Other Sox family TFs
Other Ostreococcus RCC809 TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OSTLU_15490 Ostreococcus lucimarinus OSTLU_15490 N 0.563
EuGene.0000030607 Micromonas pusilla EuGene.0000030607 N 0.539
est_cluster_kg.Chr_05__92__3202834:1 Micromonas sp RCC299 est_cluster_kg.Chr_05__92__3202834:1 I 0.496
EuGene.0300010215 Micromonas sp RCC299 EuGene.0300010215 I 0.495
BATDEDRAFT_7789 Batrachochytrium dendrobatidis BATDEDRAFT_7789 I 0.468
RTG_00107 Rhodotorula glutinis RTG_00107 I 0.465
Gorai.007G078500 Gossypium raimondii Gorai.007G078500 N 0.444
CMT447C Cyanidioschyzon merolae CMT447C I 0.437
SPPG_01639 Spizellomyces punctatus SPPG_01639 I 0.430
RHTO_01283 Rhodosporidium toruloides RHTO_01283 I 0.427
Sb01g042850 Sorghum bicolor Sb01g042850 I 0.421
OS03G0215200 Oryza sativa OS03G0215200 I 0.421
Si037608m.g Setaria italica Si037608m.g I 0.421
TRIUR3_31693 Triticum urartu TRIUR3_31693 I 0.421
Pavir.Ib00755 Panicum virgatum Pavir.Ib00755 I 0.421
PDK_20s1325902g001 Phoenix dactylifera PDK_20s1325902g001 I 0.421
Pavir.Ia04690 Panicum virgatum Pavir.Ia04690 I 0.421
ORUFI03G08400 Oryza rufipogon ORUFI03G08400 I 0.421
Traes_4AS_BE972A266 Triticum aestivum Traes_4AS_BE972A266 I 0.421
Traes_4BL_34FE2C7F2 Triticum aestivum Traes_4BL_34FE2C7F2 I 0.421
Traes_4AS_BE972A2661 Triticum aestivum Traes_4AS_BE972A2661 I 0.421
OPUNC03G08080 Oryza punctata OPUNC03G08080 I 0.421
GSMUA_Achr4G01430_001 Musa acuminata GSMUA_Achr4G01430_001 I 0.421
GSMUA_Achr5G08930_001 Musa acuminata GSMUA_Achr5G08930_001 I 0.421
GSMUA_Achr6G24550_001 Musa acuminata GSMUA_Achr6G24550_001 I 0.421
GSMUA_Achr3G25290_001 Musa acuminata GSMUA_Achr3G25290_001 I 0.421
GRMZM2G102218 Zea mays GRMZM2G102218 I 0.421
BGIOSGA012115 Oryza indica BGIOSGA012115 I 0.421
BRADI1G69900 Brachypodium distachyon BRADI1G69900 I 0.421
GRMZM2G088309 Zea mays GRMZM2G088309 I 0.421
GSMUA_Achr8G04340_001 Musa acuminata GSMUA_Achr8G04340_001 I 0.421
LPERR03G07620 Leersia perrieri LPERR03G07620 I 0.421
OMERI03G08070 Oryza meridionalis OMERI03G08070 I 0.421
ONIVA03G09180 Oryza nivara ONIVA03G09180 I 0.421
OLONG_009200 Oryza longistaminata OLONG_009200 I 0.421
OGLUM03G08460 Oryza glumaepatula OGLUM03G08460 I 0.421
OB03G18700 Oryza brachyantha OB03G18700 I 0.421
OBART03G08320 Oryza barthii OBART03G08320 I 0.421
ORGLA03G0081000 Oryza glaberrima ORGLA03G0081000 I 0.421
PHACADRAFT_247984 Phanerochaete carnosa PHACADRAFT_247984 N 0.415