fgenesh1_pg.C_scaffold_7000437 (Phanerochaete chrysosporium)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh1_pg.C_scaffold_7000437 T334113_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN

NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.417 0.449
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS

SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.417 0.449
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN

NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.417 0.449
ROX1
M11346_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.417 0.449
ROX1
M11347_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.417 0.449
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_7000437 Sox 55 124

Links

Other Sox family TFs
Other Phanerochaete chrysosporium TFs

255 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ALUE_0001067601 Ascaris lumbricoides ALUE_0001067601 N 0.000
ASU_05185 Ascaris suum ASU_05185 N 0.000
Bm10445 Brugia malayi Bm10445 N 0.000
BTMF_0000589101 Brugia timori BTMF_0000589101 N 0.000
EEL_0000260001 Elaeophora elaphi EEL_0000260001 N 0.000
EVEC_0001289301 Enterobius vermicularis EVEC_0001289301 N 0.000
GPUH_0000267201 Gongylonema pulchrum GPUH_0000267201 N 0.000
LOAG_02366 Loa loa LOAG_02366 N 0.000
nAv.1.0.1.g00998 Acanthocheilonema viteae nAv.1.0.1.g00998 N 0.000
nOo.2.0.1.g10336 Onchocerca ochengi nOo.2.0.1.g10336 N 0.000
PEQ_0000927101 Parascaris equorum PEQ_0000927101 N 0.000
SMUV_0000329501 Syphacia muris SMUV_0000329501 N 0.000
TCLT_0000788101 Thelazia callipaeda TCLT_0000788101 N 0.000
WBGene00246796 Onchocerca volvulus WBGene00246796 N 0.000
WUBG_09882 Wuchereria bancrofti WUBG_09882 N 0.000