CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh1_pm.C_scaffold_14000132
(
Cochliobolus heterostrophus C5
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
fgenesh1_pm.C_scaffold_14000132
T334126_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU02819
M02490_2.00
Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN
PBM
Weirauch et al.(2014)
pTH9672
0.548
0.672
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_14000132
Sox
123
189
PERPPSAYVIFSNQVRESLKGQDLSFTEIAKVVGEKWQVLPAEEREGCERQANGAKEKYYAELTEYK
Links
Other
Sox
family TFs
Other
Cochliobolus heterostrophus C5
TFs
106 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy