fgenesh2_pg.7_#_214 (Fragilariopsis cylindrus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.7_#_214 T334133_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.7_#_214 Sox 45 81
fgenesh2_pg.7_#_214 Sox 90 146

Links

Other Sox family TFs
Other Fragilariopsis cylindrus TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.486
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.459
Phatr3_J49937 Phaeodactylum tricornutum Phatr3_J49937 N 0.455
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.453
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.448
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.445
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.444
fgenesh2_pg.9_#_75 Fragilariopsis cylindrus fgenesh2_pg.9_#_75 N 0.442
Phatr3_J42576 Phaeodactylum tricornutum Phatr3_J42576 N 0.438
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.428
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.426
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.423
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.419