fgenesh2_pg.scaffold_121000046 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.scaffold_121000046 T334140_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_121000046 Sox 664 731

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh2_pg.scaffold_16000083 Branchiostoma floridae fgenesh2_pg.scaffold_16000083 N 0.710
fgenesh2_pg.scaffold_121000044 Branchiostoma floridae fgenesh2_pg.scaffold_121000044 N 0.694
gw1.72.30.1 Phycomyces blakesleeanus gw1.72.30.1 I 0.435
RO3G_07013 Rhizopus oryzae RO3G_07013 I 0.427
fgeneshMC_pg.1_#_1771 Mucor circinelloides fgeneshMC_pg.1_#_1771 I 0.421
estExt_fgeneshMC_pg.C_20910 Mucor circinelloides estExt_fgeneshMC_pg.C_20910 I 0.420
AOL_s00076g81 Arthrobotrys oligospora AOL_s00076g81 I 0.419