CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_1690000001
(
Branchiostoma floridae
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
fgenesh2_pg.scaffold_1690000001
T334144_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_1690000001
Sox
1305
1372
AKRPPSGYILFSSEMRATLKKQNPNYAFGEISRIVGMEWKNLSAAQKAVYEERAQQQSSSQNDDESPY
Links
Other
Sox
family TFs
Other
Branchiostoma floridae
TFs
90 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
nAv.1.0.1.g05839
Acanthocheilonema viteae
nAv.1.0.1.g05839
N
0.424
ASIM_0000224701
Anisakis simplex
ASIM_0000224701
N
0.436
ASIM_0001613301
Anisakis simplex
ASIM_0001613301
N
0.516
AFUN005717
Anopheles funestus
AFUN005717
N
0.425
ASU_00939
Ascaris suum
ASU_00939
N
0.472
ENSAMXG00000016832
Astyanax mexicanus
ENSAMXG00000016832
N
0.444
ACEP19638
Atta cephalotes
ACEP19638
I
0.418
BGLB013626
Biomphalaria glabrata
BGLB013626
N
0.488
Bm7765
Brugia malayi
Bm7765
N
0.424
Bm2393
Brugia malayi
Bm2393
N
0.479
Bm9369
Brugia malayi
Bm9369
N
0.424
BTMF_0001006201
Brugia timori
BTMF_0001006201
I
0.431
BTMF_0001478401
Brugia timori
BTMF_0001478401
N
0.455
BTMF_0001523401
Brugia timori
BTMF_0001523401
N
0.424
BXY_0575000
Bursaphelenchus xylophilus
BXY_0575000
N
0.425
CBN07735
Caenorhabditis brenneri
CBN07735
N
0.417
CBN15844
Caenorhabditis brenneri
CBN15844
N
0.508
CBN31697
Caenorhabditis brenneri
CBN31697
N
0.417
CBG11867
Caenorhabditis briggsae
CBG11867
N
0.417
CBG18873
Caenorhabditis briggsae
CBG18873
N
0.442
pbrm-1
Caenorhabditis elegans
WBGene00007042
N
0.417
hmg-6
Caenorhabditis elegans
WBGene00009827
N
0.435
CJA17191
Caenorhabditis japonica
CJA17191
N
0.456
CRE28315
Caenorhabditis remanei
CRE28315
N
0.475
CRE14258
Caenorhabditis remanei
CRE14258
N
0.417
ENSCSAVG00000009270
Ciona savignyi
ENSCSAVG00000009270
N
0.420
CGI_10018256
Crassostrea gigas
CGI_10018256
N
0.450
pbrm1l
Danio rerio
ENSDARG00000077038
N
0.438
DICVIV_02621
Dictyocaulus viviparus
DICVIV_02621
N
0.433
nDi.2.2.2.g10298
Dirofilaria immitis
nDi.2.2.2.g10298
N
0.479
nDi.2.2.2.g06671
Dirofilaria immitis
nDi.2.2.2.g06671
N
0.479
DME_0000632401
Dracunculus medinensis
DME_0000632401
N
0.416
EEL_0000724001
Elaeophora elaphi
EEL_0000724001
N
0.424
GLYMA01G33240
Glycine max
GLYMA01G33240
I
0.422
GPUH_0001659301
Gongylonema pulchrum
GPUH_0001659301
N
0.526
Hba_16915
Heterorhabditis bacteriophora
Hba_16915
I
0.439
ISCW005293
Ixodes scapularis
ISCW005293
N
0.448
nLs.2.1.2.g08566
Litomosoides sigmodontis
nLs.2.1.2.g08566
N
0.479
nLs.2.1.2.g07200
Litomosoides sigmodontis
nLs.2.1.2.g07200
N
0.424
LOAG_11340
Loa loa
LOAG_11340
N
0.424
LOAG_15875
Loa loa
LOAG_15875
N
0.526
LotgiG144192
Lottia gigantea
LotgiG144192
N
0.450
LotgiG176647
Lottia gigantea
LotgiG176647
N
0.422
MhA1_Contig1224.frz3.gene1
Meloidogyne hapla
MhA1_Contig1224.frz3.gene1
N
0.429
MhA1_Contig232.frz3.gene23
Meloidogyne hapla
MhA1_Contig232.frz3.gene23
N
0.433
Minc06622
Meloidogyne incognita
Minc06622
N
0.433
MYCTH_2294934
Myceliophthora thermophila
MYCTH_2294934
I
0.424
NECAME_06830
Necator americanus
NECAME_06830
N
0.445
NEMVEDRAFT_v1g127783
Nematostella vectensis
NEMVEDRAFT_v1g127783
N
0.458
HPODL_03671
Ogataea parapolymorpha
HPODL_03671
I
0.426
SNAPOd2T00002710001
Oikopleura dioica
SNAPOd2T00002710001
I
0.467
OFLC_0000194401
Onchocerca flexuosa
OFLC_0000194401
N
0.424
nOo.2.0.1.g03638
Onchocerca ochengi
nOo.2.0.1.g03638
N
0.424
nOo.2.0.1.g07918
Onchocerca ochengi
nOo.2.0.1.g07918
N
0.479
WBGene00238178
Onchocerca volvulus
WBGene00238178
N
0.479
WBGene00239172
Onchocerca volvulus
WBGene00239172
N
0.424
PEQ_0000291001
Parascaris equorum
PEQ_0000291001
I
0.427
PTRK_0001310900
Parastrongyloides trichosuri
PTRK_0001310900
N
0.437
ENSPFOG00000002336
Poecilia formosa
ENSPFOG00000002336
N
0.427
ENSPFOG00000017300
Poecilia formosa
ENSPFOG00000017300
N
0.446
Sakowv30031460m.g
Saccoglossus kowalevskii
Sakowv30031460m.g
N
0.478
L596_g21045
Steinernema carpocapsae
L596_g21045
I
0.430
L889_g13125
Steinernema feltiae
L889_g13125
N
0.417
L898_g14011
Steinernema monticolum
L898_g14011
N
0.424
L892_g13433
Steinernema scapterisci
L892_g13433
I
0.430
SMAR009325
Strigamia maritima
SMAR009325
N
0.469
SPU_025140
Strongylocentrotus purpuratus
SPU_025140
N
0.437
SPAL_0001274100
Strongyloides papillosus
SPAL_0001274100
N
0.437
SSTP_0001127200
Strongyloides stercoralis
SSTP_0001127200
N
0.429
SSTP_0000878000
Strongyloides stercoralis
SSTP_0000878000
N
0.444
SVE_0827400
Strongyloides venezuelensis
SVE_0827400
N
0.437
SVUK_0000686401
Strongylus vulgaris
SVUK_0000686401
N
0.483
SMUV_0000135001
Syphacia muris
SMUV_0000135001
N
0.479
TELCIR_19210
Teladorsagia circumcincta
TELCIR_19210
N
0.445
TELCIR_25179
Teladorsagia circumcincta
TELCIR_25179
N
0.439
tetur31g00840
Tetranychus urticae
tetur31g00840
N
0.461
tetur31g00660
Tetranychus urticae
tetur31g00660
N
0.461
tetur31g01070
Tetranychus urticae
tetur31g01070
N
0.461
TCLT_0000189901
Thelazia callipaeda
TCLT_0000189901
N
0.479
D917_05048
Trichinella nativa
D917_05048
N
0.463
D917_05046
Trichinella nativa
D917_05046
N
0.463
EFV56090
Trichinella spiralis
EFV56090
N
0.463
EFV56095
Trichinella spiralis
EFV56095
N
0.463
TMUE_s0089001400
Trichuris muris
TMUE_s0089001400
N
0.465
TMUE_s0227000300
Trichuris muris
TMUE_s0227000300
N
0.456
D918_05288
Trichuris suis
D918_05288
N
0.465
D918_06015
Trichuris suis
D918_06015
N
0.463
WUBG_00348
Wuchereria bancrofti
WUBG_00348
N
0.479
WUBG_03167
Wuchereria bancrofti
WUBG_03167
N
0.424
ENSXMAG00000016160
Xiphophorus maculatus
ENSXMAG00000016160
N
0.446