fgenesh2_pg.scaffold_535000011 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.scaffold_535000011 T334164_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_535000011 Sox 44 85

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GH17483 Drosophila grimshawi FBgn0124953 N 0.420
GPLIN_001054700 Globodera pallida GPLIN_001054700 N 0.423
OLONG_013579 Oryza longistaminata OLONG_013579 N 0.507
PTTG_03070 Puccinia triticina PTTG_03070 N 0.437
GLOINDRAFT_16424 Rhizophagus irregularis GLOINDRAFT_16424 N 0.447
Sakowv30045438m.g Saccoglossus kowalevskii Sakowv30045438m.g N 0.463
SMU15010330 Schmidtea mediterranea SMU15010330 N 0.422
SERLA73DRAFT_158240 Serpula lacrymans SERLA73DRAFT_158240 N 0.428
M422DRAFT_50085 Sphaerobolus stellatus M422DRAFT_50085 N 0.445
SPU_025467 Strongylocentrotus purpuratus SPU_025467 N 0.416
TVAG_468590 Trichomonas vaginalis TVAG_468590 N 0.429