CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgeneshHS_pg.scaffold_50000080
(
Naegleria gruberi
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
fgeneshHS_pg.scaffold_50000080
T334184_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgeneshHS_pg.scaffold_50000080
Sox
514
557
KTKQPTKYNLFMKENYKKLKDKNPHLDRKELMKLVAQSYKESNQ
Links
Other
Sox
family TFs
Other
Naegleria gruberi
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MGG_00866
Magnaporthe oryzae
MGG_00866
N
0.484
fgenesh1_pm.9__12
Bigelowiella natans
fgenesh1_pm.9__12
N
0.480
MYCTH_2308522
Myceliophthora thermophila
MYCTH_2308522
I
0.477
GSTUM_00007488001
Tuber melanosporum
GSTUM_00007488001
N
0.476
fgenesh2_pg.C_Chr_03000283
Micromonas sp RCC299
fgenesh2_pg.C_Chr_03000283
N
0.466
UCRNP2_5126
Neofusicoccum parvum
UCRNP2_5126
N
0.454
MCINX004608
Melitaea cinxia
MCINX004608
N
0.451
BGIBMGA002931
Bombyx mori
BGIBMGA002931
N
0.451
ACEP22065
Atta cephalotes
ACEP22065
N
0.451
LDEC009474
Leptinotarsa decemlineata
LDEC009474
N
0.451
YQE_12532
Dendroctonus ponderosae
YQE_12532
N
0.451
SINV11745
Solenopsis invicta
SINV11745
N
0.451
W97_08209
Coniosporium apollinis
W97_08209
N
0.445
SBOR_2840
Sclerotinia borealis
SBOR_2840
N
0.441
KGM_21779
Danaus plexippus
KGM_21779
N
0.440
MBM_07425
Marssonina brunnea
MBM_07425
N
0.438
ubtfl
Danio rerio
ENSDARG00000038780
N
0.436
GUITHDRAFT_163519
Guillardia theta
GUITHDRAFT_163519
I
0.436
PTSG_02585
Salpingoeca rosetta
PTSG_02585
N
0.429
THITE_22048
Thielavia terrestris
THITE_22048
I
0.426
TRIATDRAFT_37227
Trichoderma atroviride
TRIATDRAFT_37227
N
0.426
PODANS_5_8400
Podospora anserina
PODANS_5_8400
N
0.425
TRIVIDRAFT_16124
Trichoderma virens
TRIVIDRAFT_16124
N
0.425
OIDMADRAFT_54116
Oidiodendron maius
OIDMADRAFT_54116
N
0.422
ACYPI006465
Acyrthosiphon pisum
ACYPI006465
N
0.422
GG13363
Drosophila erecta
FBgn0105635
N
0.421