CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.1.828.1
(
Phycomyces blakesleeanus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
gw1.1.828.1
T334232_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.1.828.1
Sox
11
63
PKGPGNVFFLFCRLERDNIKDEMPNESLGDVTRALGQRWKALPNSEKQVFNIK
Links
Other
Sox
family TFs
Other
Phycomyces blakesleeanus
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
e_gw1.39.66.1
Phycomyces blakesleeanus
e_gw1.39.66.1
N
0.610
estExt_fgeneshPB_pg.C_220136
Phycomyces blakesleeanus
estExt_fgeneshPB_pg.C_220136
N
0.477
Hsal_18129--FBpp0074818_DROME
Harpegnathos saltator
Hsal_18129--FBpp0074818_DROME
N
0.430
CGI_10028611
Crassostrea gigas
CGI_10028611
N
0.428
gw1.8.568.1
Mucor circinelloides
gw1.8.568.1
N
0.425
RO3G_16621
Rhizopus oryzae
RO3G_16621
N
0.425
RO3G_15546
Rhizopus oryzae
RO3G_15546
N
0.425
fgeneshMC_pg.4_#_602
Mucor circinelloides
fgeneshMC_pg.4_#_602
N
0.416