CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mgf000387m
(
Mimulus guttatus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
mgf000387m
T334279_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf000387m
Sox
144
188
CSFVGTYKELRKHVKTEHPSSKPPREVDPALEQRWRMMERERENE
Links
Other
Sox
family TFs
Other
Mimulus guttatus
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
mgf013454m
Mimulus guttatus
mgf013454m
N
0.741
MLOC_54605
Hordeum vulgare
MLOC_54605
N
0.707
TRIUR3_20834
Triticum urartu
TRIUR3_20834
N
0.707
F775_20121
Aegilops tauschii
F775_20121
N
0.707
Traes_6DL_647FC758E1
Triticum aestivum
Traes_6DL_647FC758E1
N
0.707
Pavir.J01310
Panicum virgatum
Pavir.J01310
N
0.697
Si017699m.g
Setaria italica
Si017699m.g
N
0.697
ORUFI02G35580
Oryza rufipogon
ORUFI02G35580
I
0.697
OGLUM02G35200
Oryza glumaepatula
OGLUM02G35200
I
0.697
BGIOSGA009119
Oryza indica
BGIOSGA009119
N
0.697
OS02G0770600
Oryza sativa
OS02G0770600
N
0.697
OMERI02G32400
Oryza meridionalis
OMERI02G32400
I
0.697
Pavir.Aa00349
Panicum virgatum
Pavir.Aa00349
N
0.697
OBART02G34050
Oryza barthii
OBART02G34050
N
0.697
ORGLA02G0294700
Oryza glaberrima
ORGLA02G0294700
N
0.697
LPERR02G27910
Leersia perrieri
LPERR02G27910
N
0.697
ONIVA02G36110
Oryza nivara
ONIVA02G36110
I
0.697
OLONG_015646
Oryza longistaminata
OLONG_015646
N
0.697
OB07G29110
Oryza brachyantha
OB07G29110
N
0.697
OPUNC02G31450
Oryza punctata
OPUNC02G31450
N
0.697
Aquca_014_00165
Aquilegia coerulea
Aquca_014_00165
N
0.695
OB02G40920
Oryza brachyantha
OB02G40920
N
0.691
orange1.1g020440m.g
Citrus sinensis
orange1.1g020440m.g
N
0.687
Ciclev10001827m.g
Citrus clementina
Ciclev10001827m.g
N
0.687
Gorai.005G260200
Gossypium raimondii
Gorai.005G260200
N
0.680
gene11787-v1.0-hybrid
Fragaria vesca
gene11787-v1.0-hybrid
N
0.655
POPTR_0003s01620
Populus trichocarpa
POPTR_0003s01620
N
0.645
PK04394.1
Cannabis sativa
PK04394.1
N
0.642
Ciclev10001601m.g
Citrus clementina
Ciclev10001601m.g
N
0.641
SapurV1A.0647s0030
Salix purpurea
SapurV1A.0647s0030
N
0.641
orange1.1g017878m.g
Citrus sinensis
orange1.1g017878m.g
N
0.641
evm.TU.supercontig_49.134
Carica papaya
evm.TU.supercontig_49.134
N
0.636
VIT_12s0034g00960
Vitis vinifera
VIT_12s0034g00960
N
0.623
BRADI3G57700
Brachypodium distachyon
BRADI3G57700
N
0.623
POPTR_0001s21610
Populus trichocarpa
POPTR_0001s21610
N
0.622
SapurV1A.0869s0080
Salix purpurea
SapurV1A.0869s0080
N
0.622
MDP0000597087
Malus domestica
MDP0000597087
N
0.621
TCM_006422
Theobroma cacao
TCM_006422
N
0.620
30116.m000393
Ricinus communis
30116.m000393
N
0.616
PGSC0003DMG400023744
Solanum tuberosum
PGSC0003DMG400023744
N
0.608
cassava19406.valid.m1
Manihot esculenta
cassava19406.valid.m1
N
0.601
GSMUA_Achr2G01240_001
Musa acuminata
GSMUA_Achr2G01240_001
N
0.596
PGSC0003DMG400026151
Solanum tuberosum
PGSC0003DMG400026151
N
0.583
MDP0000634922
Malus domestica
MDP0000634922
N
0.581
GSMUA_Achr8G18160_001
Musa acuminata
GSMUA_Achr8G18160_001
N
0.581
evm.TU.supercontig_49.133
Carica papaya
evm.TU.supercontig_49.133
N
0.579
PRUPE_ppa007591mg
Prunus persica
PRUPE_ppa007591mg
N
0.573
Cla002005
Citrullus lanatus
Cla002005
N
0.566
Cucsa.239250
Cucumis sativus
Cucsa.239250
N
0.566
Thhalv10028879m.g
Eutrema salsugineum
Thhalv10028879m.g
N
0.566
PK16821.1
Cannabis sativa
PK16821.1
N
0.560
VIT_18s0001g03950
Vitis vinifera
VIT_18s0001g03950
N
0.548