mgf000913m (Mimulus guttatus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 mgf000913m T334280_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.551 0.696
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mgf000913m Sox 35 104

Links

Other Sox family TFs
Other Mimulus guttatus TFs

262 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.636
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.607
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.607
mgf006113m Mimulus guttatus mgf006113m I 0.605
mgf016608m Mimulus guttatus mgf016608m I 0.605
mgf008076m Mimulus guttatus mgf008076m I 0.605
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.604
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.604
mgf009330m Mimulus guttatus mgf009330m I 0.599
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.598
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.598
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.597
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.593
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.591
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.591
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.591
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.591
Bra025838 Brassica rapa Bra025838 I 0.591
Bo7g061420 Brassica oleracea Bo7g061420 I 0.591
HMGB3 Arabidopsis thaliana AT1G20696 I 0.591
Bo8g070350 Brassica oleracea Bo8g070350 I 0.591
mgf014518m Mimulus guttatus mgf014518m I 0.591
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.590
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.590
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.590
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.589
Pm026798 Prunus mume Pm026798 I 0.588
MDP0000607529 Malus domestica MDP0000607529 I 0.587
Si031512m.g Setaria italica Si031512m.g I 0.581
Ca_09896 Cicer arietinum Ca_09896 I 0.581
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.581
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.581
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.581
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.581
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.580
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.575
Cla009093 Citrullus lanatus Cla009093 I 0.575
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.575
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.572
OS09G0551600 Oryza sativa OS09G0551600 I 0.571
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.571
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.571
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.571
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.571
OB09G25530 Oryza brachyantha OB09G25530 I 0.571
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.571
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.571
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.571
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.570
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.570
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.569
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.569
TCM_034406 Theobroma cacao TCM_034406 I 0.569
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.569
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.569
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.565
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.565
TCM_000068 Theobroma cacao TCM_000068 I 0.565
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.565
Bo5g030580 Brassica oleracea Bo5g030580 I 0.564
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.564
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.562
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.562
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.562
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.562
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.562
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.562
30170.m014386 Ricinus communis 30170.m014386 I 0.562
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.561
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.561
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.560
29669.m000844 Ricinus communis 29669.m000844 I 0.560
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.559
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.559
Bo8g081200 Brassica oleracea Bo8g081200 I 0.559
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.559
HMGB1 Arabidopsis thaliana AT3G51880 I 0.559
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.559
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.559
Bo7g101270 Brassica oleracea Bo7g101270 I 0.559
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.558
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.558
Bra002073 Brassica rapa Bra002073 I 0.555
MDP0000275042 Malus domestica MDP0000275042 I 0.553
Pm018913 Prunus mume Pm018913 I 0.552
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.552
MDP0000757111 Malus domestica MDP0000757111 I 0.552
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.552
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.552
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.552
MDP0000362980 Malus domestica MDP0000362980 I 0.552
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.551
HMG-1 Pisum sativum Q41026_PEA D 0.551
HMGB2 Arabidopsis thaliana AT1G20693 I 0.545
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.545
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.545
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.545
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.545
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.544
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.543
mgf016363m Mimulus guttatus mgf016363m I 0.543
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.542
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.540
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.537
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.537
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.536
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.535
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.535
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.535
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.535
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.534
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.531
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.531
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.531
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.531
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.531
Bra037266 Brassica rapa Bra037266 I 0.530
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.530
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.529
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.529
Bo7g014280 Brassica oleracea Bo7g014280 I 0.526
HMGB4 Arabidopsis thaliana AT2G17560 I 0.526
Pm002934 Prunus mume Pm002934 I 0.525
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.525
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.523
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.519
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.519
TCM_042534 Theobroma cacao TCM_042534 I 0.518
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.517
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.515
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.515
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.515
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.514
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.514
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.514
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.514
OB06G35870 Oryza brachyantha OB06G35870 I 0.514
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.514
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.514
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.514
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.514
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.514
OS06G0728000 Oryza sativa OS06G0728000 I 0.514
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.514
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.514
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.514
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.514
OBART06G28090 Oryza barthii OBART06G28090 I 0.514
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.514
Si007288m.g Setaria italica Si007288m.g I 0.514
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.512
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.512
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.512
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.512
Ca_10725 Cicer arietinum Ca_10725 I 0.510
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.509
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.509
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.509
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.508
F775_27510 Aegilops tauschii F775_27510 I 0.508
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.508
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.508
Ca_19340 Cicer arietinum Ca_19340 I 0.506
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.503
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.502
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.501
Ca_05351 Cicer arietinum Ca_05351 I 0.501
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.501
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.499
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.499
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.498
Bra011624 Brassica rapa Bra011624 I 0.497
Bra017723 Brassica rapa Bra017723 I 0.497
PK29786.1 Cannabis sativa PK29786.1 I 0.497
Bo7g117500 Brassica oleracea Bo7g117500 I 0.497
Bo1g006360 Brassica oleracea Bo1g006360 I 0.497
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.493
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.491
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.491
29701.m000600 Ricinus communis 29701.m000600 I 0.491
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.491
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.491
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.491
Cla023817 Citrullus lanatus Cla023817 I 0.490
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.490
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.490
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.490
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.490
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.490
PK11149.1 Cannabis sativa PK11149.1 I 0.488
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.485
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.485
TCM_021706 Theobroma cacao TCM_021706 I 0.482
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.475
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.472
Cla018386 Citrullus lanatus Cla018386 I 0.472
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.472
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.472
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.472
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.472
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.468
Ca_04825 Cicer arietinum Ca_04825 I 0.462
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.461
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.457
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.454
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.454
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.453
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.453
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.452
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.452
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.450
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.449
PK14705.1 Cannabis sativa PK14705.1 I 0.448
29600.m000548 Ricinus communis 29600.m000548 I 0.447
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.446
Cla009222 Citrullus lanatus Cla009222 I 0.444
TCM_007659 Theobroma cacao TCM_007659 I 0.444
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.444
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.443
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.443
OBART08G00070 Oryza barthii OBART08G00070 I 0.443
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.443
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.443
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.443
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.443
OS08G0101100 Oryza sativa OS08G0101100 I 0.443
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.443
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.442
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.442
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.440
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.438
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.438
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.437
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.433
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.433
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.433
OS02G0670400 Oryza sativa OS02G0670400 N 0.433
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.433
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.433
Si018635m.g Setaria italica Si018635m.g N 0.433
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.433
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.433
OB02G34710 Oryza brachyantha OB02G34710 N 0.433
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.433
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.433
OBART02G27340 Oryza barthii OBART02G27340 N 0.433
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.433
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.433
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.433
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.433
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.430
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.430
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.430
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.426
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.425
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.425
OB08G10120 Oryza brachyantha OB08G10120 N 0.424
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.423
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.422
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.422
fgenesh1_pg.scaffold_277000017 Physcomitrella patens fgenesh1_pg.scaffold_277000017 I 0.420
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.418