CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ocbimv22010533m.g
(
Octopus bimaculoides
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Ocbimv22010533m.g
T334312_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ocbimv22010533m.p
Sox
769
817
KRRALTAYMLWCNSYRNKVLSENPKLDFAQISRRLGEIWQSLSEKEKLV
Links
Other
Sox
family TFs
Other
Octopus bimaculoides
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SOX1
Anolis carolinensis
ENSACAG00000006346
I
0.445
AEPI010254
Anopheles epiroticus
AEPI010254
N
0.426
AMAM014030
Anopheles maculatus
AMAM014030
N
0.426
AMIN005634
Anopheles minimus
AMIN005634
N
0.432
ASIS014204
Anopheles sinensis
ASIS014204
N
0.428
GB42921
Apis mellifera
GB42921
N
0.439
GB41882
Apis mellifera
GB41882
N
0.482
scaffold_600397.1
Arabidopsis lyrata
scaffold_600397.1
I
0.466
ACEP10859
Atta cephalotes
ACEP10859
I
0.425
ACEP25803
Atta cephalotes
ACEP25803
N
0.439
ACEP17003
Atta cephalotes
ACEP17003
N
0.482
CBN15844
Caenorhabditis brenneri
CBN15844
N
0.415
Cflo_01038--XP_625055.2_APIME
Camponotus floridanus
Cflo_01038--XP_625055.2_APIME
N
0.439
Cflo_06221--XP_392763.2_APIME
Camponotus floridanus
Cflo_06221--XP_392763.2_APIME
N
0.482
CapteG128587
Capitella teleta
CapteG128587
N
0.515
CLEC006959
Cimex lectularius
CLEC006959
I
0.418
CLEC008450
Cimex lectularius
CLEC008450
N
0.415
ENSCING00000000505
Ciona intestinalis
ENSCING00000000505
I
0.425
CGI_10027966
Crassostrea gigas
CGI_10027966
N
0.513
CpipJ_CPIJ016883
Culex pipiens
CpipJ_CPIJ016883
N
0.493
CpipJ_CPIJ003178
Culex pipiens
CpipJ_CPIJ003178
N
0.426
CPIJ003178
Culex quinquefasciatus
CPIJ003178
N
0.426
CPIJ016883
Culex quinquefasciatus
CPIJ016883
N
0.493
DAPPUDRAFT_236433
Daphnia pulex
DAPPUDRAFT_236433
N
0.452
GPUH_0001196001
Gongylonema pulchrum
GPUH_0001196001
N
0.419
GPUH_0000691201
Gongylonema pulchrum
GPUH_0000691201
N
0.419
Hsal_08739--XP_392763.2_APIME
Harpegnathos saltator
Hsal_08739--XP_392763.2_APIME
N
0.482
Hsal_02676--XP_625055.2_APIME
Harpegnathos saltator
Hsal_02676--XP_625055.2_APIME
N
0.439
Hsal_06265--XP_624018.2_APIME
Harpegnathos saltator
Hsal_06265--XP_624018.2_APIME
N
0.426
HMEL014563
Heliconius melpomene
HMEL014563
N
0.503
HelroG148277
Helobdella robusta
HelroG148277
N
0.418
Hba_16915
Heterorhabditis bacteriophora
Hba_16915
I
0.436
ISCW005293
Ixodes scapularis
ISCW005293
N
0.501
ISCW008318
Ixodes scapularis
ISCW008318
N
0.627
Lus10023090.g
Linum usitatissimum
Lus10023090.g
N
0.477
LLOJ007360
Lutzomyia longipalpis
LLOJ007360
N
0.480
MESCA011128
Megaselia scalaris
MESCA011128
N
0.444
EuGene.0000010567
Micromonas pusilla
EuGene.0000010567
N
0.426
est_cluster_kg.Chr_07__66__3199198:1
Micromonas sp RCC299
est_cluster_kg.Chr_07__66__3199198:1
N
0.426
NV16860
Nasonia vitripennis
NV16860
N
0.540
NV11063
Nasonia vitripennis
NV11063
N
0.438
NEMVEDRAFT_v1g240009
Nematostella vectensis
NEMVEDRAFT_v1g240009
N
0.418
SNAPOd2T00002710001
Oikopleura dioica
SNAPOd2T00002710001
I
0.474
ENSOARG00000009998
Ovis aries
ENSOARG00000009998
I
0.418
ENSPTRG00000005969
Pan troglodytes
ENSPTRG00000005969
I
0.438
PEQ_0000291001
Parascaris equorum
PEQ_0000291001
I
0.462
PHUM393920
Pediculus humanus
PHUM393920
N
0.432
PPAI008460
Phlebotomus papatasi
PPAI008460
N
0.480
PNEG_03347
Pneumocystis murina
PNEG_03347
I
0.436
scaffold593-EXSNAP2012.5
Pristionchus exspectatus
scaffold593-EXSNAP2012.5
N
0.419
PPA12247
Pristionchus pacificus
PPA12247
N
0.419
SOX3
Pteropus vampyrus
ENSPVAG00000003166
I
0.418
RPRC014334
Rhodnius prolixus
RPRC014334
I
0.418
RPRC003655
Rhodnius prolixus
RPRC003655
N
0.553
Sakowv30021656m.g
Saccoglossus kowalevskii
Sakowv30021656m.g
N
0.539
SBAD_0000070901
Soboliphyme baturini
SBAD_0000070901
I
0.432
SINV16486
Solenopsis invicta
SINV16486
N
0.439
SINV19744
Solenopsis invicta
SINV19744
I
0.425
TOX2
Sorex araneus
ENSSARG00000001080
N
0.426
L898_g3197
Steinernema monticolum
L898_g3197
I
0.417
SMAR009325
Strigamia maritima
SMAR009325
N
0.416
SMAR009610
Strigamia maritima
SMAR009610
N
0.559
SPU_000793
Strongylocentrotus purpuratus
SPU_000793
N
0.537
ENSTGUG00000014902
Taeniopygia guttata
ENSTGUG00000014902
N
0.432
TELCIR_19210
Teladorsagia circumcincta
TELCIR_19210
N
0.451
TELCIR_25179
Teladorsagia circumcincta
TELCIR_25179
N
0.445
UCRPA7_3157
Togninia minima
UCRPA7_3157
N
0.423
TRE_0001899601
Trichobilharzia regenti
TRE_0001899601
N
0.428
TRIVIDRAFT_52649
Trichoderma virens
TRIVIDRAFT_52649
N
0.441
L798_00437
Zootermopsis nevadensis
L798_00437
N
0.432
L798_00141
Zootermopsis nevadensis
L798_00141
N
0.542