Ocbimv22024932m.g (Octopus bimaculoides)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ocbimv22024932m.g T334322_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW

AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.439 0.333
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD

HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.439 0.333
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22024932m.p Sox 44 112

Links

Other Sox family TFs
Other Octopus bimaculoides TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LotgiG167034 Lottia gigantea LotgiG167034 N 0.512
MAC_05350 Metarhizium acridum MAC_05350 I 0.452
MAJ_11317 Metarhizium majus MAJ_11317 I 0.452
MBR_08193 Metarhizium brunneum MBR_08193 I 0.452
UV8b_1585 Ustilaginoidea virens UV8b_1585 I 0.452
MAM_01740 Metarhizium album MAM_01740 I 0.452
OCS_00196 Ophiocordyceps sinensis OCS_00196 I 0.452
CGGC5_3189 Colletotrichum gloeosporioides CGGC5_3189 I 0.451
GGTG_04697 Gaeumannomyces graminis GGTG_04697 I 0.451
F503_06490 Ophiostoma piceae uamh F503_06490 I 0.439
mat3-Mc Schizosaccharomyces pombe SPMTR.04 I 0.439
mat1-Mc Schizosaccharomyces pombe SPBC23G7.09 D 0.439
mat3-Mc Schizosaccharomyces pombe SPBC1711.02 I 0.439
CH063_09403 Colletotrichum higginsianum CH063_09403 I 0.432
EPUS_08057 Endocarpon pusillum EPUS_08057 I 0.432
CFIO01_09392 Colletotrichum fioriniae CFIO01_09392 I 0.432
U727_00429890111 Penicillium solitum U727_00429890111 I 0.431
PITC_063570 Penicillium italicum PITC_063570 I 0.431
UCRNP2_5172 Neofusicoccum parvum UCRNP2_5172 I 0.431
TRIREDRAFT_124341 Trichoderma reesei TRIREDRAFT_124341 I 0.430
TRIATDRAFT_33998 Trichoderma atroviride TRIATDRAFT_33998 I 0.430
BAUCODRAFT_67524 Baudoinia compniacensis BAUCODRAFT_67524 I 0.428
HmN_000097600 Hymenolepis microstoma HmN_000097600 I 0.427
HNAJ_0000734901 Hymenolepis nana HNAJ_0000734901 I 0.427
HDID_0000757301 Hymenolepis diminuta HDID_0000757301 I 0.427
gw1.41.85.1 Phycomyces blakesleeanus gw1.41.85.1 I 0.427
PODANS_1_20590 Podospora anserina PODANS_1_20590 I 0.419
soxh Ciona intestinalis ENSCING00000008820 I 0.419
ACEP10847 Atta cephalotes ACEP10847 I 0.417