Ocbimv22031259m.g (Octopus bimaculoides)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ocbimv22031259m.g T334325_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.493 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22031254m.p Sox 41 109
Ocbimv22031255m.p Sox 87 155
Ocbimv22031256m.p Sox 7 75
Ocbimv22031257m.p Sox 41 109
Ocbimv22031258m.p Sox 7 75
Ocbimv22031259m.p Sox 87 155
Ocbimv22031260m.p Sox 87 155
Ocbimv22031261m.p Sox 87 155

Links

Other Sox family TFs
Other Octopus bimaculoides TFs

Invalid Input OrderBy

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action