CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ocbimv22031259m.g
(
Octopus bimaculoides
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Ocbimv22031259m.g
T334325_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hmg20b
M02487_2.00
Mus musculus
NNATTATWHWN
NWDWATAATNN
PBM
Weirauch et al.(2014)
pTH8555
0.493
0.667
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ocbimv22031254m.p
Sox
41
109
PKQPLTGYVRFLNERREKLRQENPNLSFSEITRQLGGEWSKLAPREKQRYLDDAEKDKERYLRDMEAYQ
Ocbimv22031255m.p
Sox
87
155
PKQPLTGYVRFLNERREKLRQENPNLSFSEITRQLGGEWSKLAPREKQRYLDDAEKDKERYLRDMEAYQ
Ocbimv22031256m.p
Sox
7
75
PKQPLTGYVRFLNERREKLRQENPNLSFSEITRQLGGEWSKLAPREKQRYLDDAEKDKERYLRDMEAYQ
Ocbimv22031257m.p
Sox
41
109
PKQPLTGYVRFLNERREKLRQENPNLSFSEITRQLGGEWSKLAPREKQRYLDDAEKDKERYLRDMEAYQ
Ocbimv22031258m.p
Sox
7
75
PKQPLTGYVRFLNERREKLRQENPNLSFSEITRQLGGEWSKLAPREKQRYLDDAEKDKERYLRDMEAYQ
Ocbimv22031259m.p
Sox
87
155
PKQPLTGYVRFLNERREKLRQENPNLSFSEITRQLGGEWSKLAPREKQRYLDDAEKDKERYLRDMEAYQ
Ocbimv22031260m.p
Sox
87
155
PKQPLTGYVRFLNERREKLRQENPNLSFSEITRQLGGEWSKLAPREKQRYLDDAEKDKERYLRDMEAYQ
Ocbimv22031261m.p
Sox
87
155
PKQPLTGYVRFLNERREKLRQENPNLSFSEITRQLGGEWSKLAPREKQRYLDDAEKDKERYLRDMEAYQ
Links
Other
Sox
family TFs
Other
Octopus bimaculoides
TFs
173 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy