CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ocbimv22035960m.g
(
Octopus bimaculoides
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Ocbimv22035960m.g
T334331_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sox30
M00201_2.00
Mus musculus
ATTRTBNNNN
NNNNVAYAAT
PBM
Badis et al.(2009)
Sox30_2781
0.486
0.551
SOX30
M05753_2.00
Homo sapiens
NRACAATN
NATTGTYN
SELEX
Yin et al.(2017)
SOX30_eDBD_HT-SELEX
0.486
0.551
SOX30
M05754_2.00
Homo sapiens
BATTGTYN
NRACAATV
SELEX
Yin et al.(2017)
SOX30_eDBD_Methyl-HT-SELEX
0.486
0.551
SOX4
M01026_2.00
Homo sapiens
AACAAWGR
YCWTTGTT
PBM
Scharer et al.(2009)
Sox4
0.442
0.391
Sox12
M00205_2.00
Mus musculus
HWTTGTBNNN
NNNVACAAWD
PBM
Badis et al.(2009)
Sox12_3957
0.442
0.391
Sox11
M00210_2.00
Mus musculus
WTTGTBNNN
NNNVACAAW
PBM
Badis et al.(2009)
Sox11_2266
0.442
0.391
Sox4
M00213_2.00
Mus musculus
NNVACAAWD
HWTTGTBNN
PBM
Badis et al.(2009)
Sox4_2941
0.442
0.391
SOX4
M03496_2.00
Homo sapiens
NAACAATTKCAGTGTT
AACACTGMAATTGTTN
SELEX
Jolma et al.(2013)
SOX4_1
0.442
0.391
Sox11
M03541_2.00
Mus musculus
AACAATTKCAGTGTT
AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
Sox11_1
0.442
0.391
SOX12
M05789_2.00
Homo sapiens
NATTGTTCGGK
MCCGAACAATN
SELEX
Yin et al.(2017)
SOX12_eDBD_HT-SELEX
0.442
0.391
SOX4
M05765_2.00
Homo sapiens
NRACAAWGVV
BBCWTTGTYN
SELEX
Yin et al.(2017)
SOX4_eDBD_HT-SELEX
0.442
0.391
SOX4
M09388_2.00
Homo sapiens
BYCTTTGTYYBB
VVRRACAAAGRV
Misc
Kulakovskiy et al.(2013)
SOX4_HUMAN.H11MO.0.B
0.442
0.391
Sox4
M09410_2.00
Mus musculus
BYCTTTGTYYBB
VVRRACAAAGRV
Misc
Kulakovskiy et al.(2013)
SOX4_MOUSE.H11MO.0.A
0.442
0.391
Sox4
M09641_2.00
Mus musculus
BCWTTGTYCN
NGRACAAWGV
Misc
Heinz et al.(2010)
proB-Sox4_GSE50066
0.442
0.391
SOX11
M11326_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX11_Q6
0.442
0.391
SOX4
M11301_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX4_Q3
0.442
0.391
SOX4
M11302_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX4_Q5_02
0.442
0.391
SOX4
M11303_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX4_Q5
0.442
0.391
SOX12
M05790_2.00
Homo sapiens
YATTGTTCBKT
AMVGAACAATR
SELEX
Yin et al.(2017)
SOX12_eDBD_Methyl-HT-SELEX
0.442
0.391
SOX4
M05766_2.00
Homo sapiens
NRACAAWGVV
BBCWTTGTYN
SELEX
Yin et al.(2017)
SOX4_eDBD_Methyl-HT-SELEX
0.442
0.391
Sox6
M00828_2.00
Mus musculus
WTTGTNNNN
NNNNACAAW
PBM
Weirauch et al.(2013)
pTH3862
0.436
0.420
SOX6
M05892_2.00
Homo sapiens
DRACAATRVN
NBYATTGTYH
SMiLE-seq
Isakova et al.(2017)
SOX6
0.436
0.420
Sox6
M08169_2.00
Mus musculus
BCWTTGTYYY
RRRACAAWGV
ChIP-seq
Mathelier et al.(2014)
MA0515.1
0.436
0.420
Sox6
M09640_2.00
Mus musculus
BHWTTGTBNN
NNVACAAWDV
Misc
Heinz et al.(2010)
Myotubes-Sox6_GSE32627
0.436
0.420
SOX6
M11300_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX6_Q5
0.436
0.420
Sox5
M00203_2.00
Mus musculus
ATTGTBNN
NNVACAAT
PBM
Badis et al.(2009)
Sox5_3459
0.430
0.406
Sox13
M00212_2.00
Mus musculus
RAACAATW
WATTGTTY
PBM
Badis et al.(2009)
Sox13_1718
0.430
0.406
SOX5
M05894_2.00
Homo sapiens
DVACAATRVN
NBYATTGTBH
SMiLE-seq
Isakova et al.(2017)
SOX5
0.430
0.406
Sox5
M02719_2.00
Mus musculus
NAACAAT
ATTGTTN
SELEX
Mathelier et al.(2014)
MA0087.1
0.430
0.406
SOX13
M08166_2.00
Homo sapiens
NNACAATGVNN
NNBCATTGTNN
ChIP-seq
Mathelier et al.(2014)
MA1120.1
0.430
0.406
SOX5
M09390_2.00
Homo sapiens
NAACAATN
NATTGTTN
Misc
Kulakovskiy et al.(2013)
SOX5_HUMAN.H11MO.0.C
0.430
0.406
Sox5
M09404_2.00
Mus musculus
NAACAATN
NATTGTTN
Misc
Kulakovskiy et al.(2013)
SOX5_MOUSE.H11MO.0.C
0.430
0.406
SOX5
M11309_2.00
Homo sapiens
NNAACAATNN
NNATTGTTNN
Transfac
Matys et al.(2006)
V$SOX5_01
0.430
0.406
SOX5
M11310_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX5_Q5
0.430
0.406
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ocbimv22035958m.p
Sox
1
65
MNAFMVFGRTYRSTLMKMFPTASNSQISIYLGEIWHKMSPAQQKPYFDESNRIKYKHRKDYPASS
Ocbimv22035959m.p
Sox
1
65
MNAFMVFGRTYRSTLMKMFPTASNSQISIYLGEIWHKMSPAQQKPYFDESNRIKYKHRKDYPGWV
Ocbimv22035960m.p
Sox
90
158
IKRPMNAFMVFGRTYRSTLMKMFPTASNSQISIYLGEIWHKMSPAQQKPYFDESNRIKYKHRKDYPGWV
Links
Other
Sox
family TFs
Other
Octopus bimaculoides
TFs
500 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy