Sakowv30005216m.g (Saccoglossus kowalevskii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Sakowv30005216m.g T334338_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.442 0.478
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23947363_peptide Sox 260 328

Links

Other Sox family TFs
Other Saccoglossus kowalevskii TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.613
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.613
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.579
TC011144 Tribolium castaneum TC011144 N 0.564
LotgiG231408 Lottia gigantea LotgiG231408 I 0.562
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.552
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.541
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.541
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.537
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.535
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.525
YQE_10385 Dendroctonus ponderosae YQE_10385 I 0.513
SMAR000790 Strigamia maritima SMAR000790 I 0.513
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.509
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.505
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.505
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.501
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.501
CapteG191691 Capitella teleta CapteG191691 I 0.498
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.497
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.480
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.474
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.474
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.474
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.474
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.473
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.473
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.467
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.467
hmg20b Oryzias latipes ENSORLG00000004640 I 0.467
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.467
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.467
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.467
hmg20a Danio rerio ENSDARG00000031198 I 0.467
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.457
SMAR002604 Strigamia maritima SMAR002604 I 0.456
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.455
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.454
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.445
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.445
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.445
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.445
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.445
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.445
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.445
hmg20a Oryzias latipes ENSORLG00000001794 I 0.445
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.442
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.442
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.442
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.442
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.442
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.442
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.442
Aan_R011684 Calypte anna Aan_R011684 I 0.442
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.442
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.442
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.442
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.442
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.442
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.442
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.442
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.442
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.442
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.442
Hmg20b Mus musculus ENSMUSG00000020232 D 0.442
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.442
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.442
HMG20B Canis familiaris ENSCAFG00000019215 I 0.442
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.442
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.442
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.442
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.442
HMG20B Gallus gallus ENSGALG00000027838 I 0.442
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.442
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.442
HMG20B Procavia capensis ENSPCAG00000010772 I 0.442
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.442
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.442
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.442
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.442
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.442
HMG20B Felis catus ENSFCAG00000026167 I 0.442
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.442
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.442
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.442
HMG20B Homo sapiens ENSG00000064961 I 0.442
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.442
hmg20b Danio rerio ENSDARG00000042045 I 0.442
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.442
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.440
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.435
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.429
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.419