Aquca_035_00040 (Aquilegia coerulea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Aquca_035_00040 T334374_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.444 0.493
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aquca_035_00040.1 Sox 115 184

Links

Other Sox family TFs
Other Aquilegia coerulea TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.587
PK03866.1 Cannabis sativa PK03866.1 I 0.532
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.530
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.517
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.517
TCM_007659 Theobroma cacao TCM_007659 I 0.512
Ca_09896 Cicer arietinum Ca_09896 I 0.509
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.506
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.504
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.500
OBART08G00070 Oryza barthii OBART08G00070 I 0.500
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.500
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.500
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.500
OS08G0101100 Oryza sativa OS08G0101100 I 0.500
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.500
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.500
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.500
Ca_05351 Cicer arietinum Ca_05351 I 0.499
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.493
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.493
mgf009330m Mimulus guttatus mgf009330m I 0.493
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.493
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.490
Pm006054 Prunus mume Pm006054 I 0.490
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.487
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.487
Pm026798 Prunus mume Pm026798 I 0.487
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.487
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.485
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.484
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.484
TCM_042534 Theobroma cacao TCM_042534 I 0.484
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.483
Cla009222 Citrullus lanatus Cla009222 I 0.483
OB08G10120 Oryza brachyantha OB08G10120 N 0.482
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.479
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.479
MDP0000205665 Malus domestica MDP0000205665 I 0.471
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.471
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.470
MDP0000607529 Malus domestica MDP0000607529 I 0.470
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.470
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.470
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.467
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.467
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.465
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.465
TCM_000068 Theobroma cacao TCM_000068 I 0.464
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.464
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.464
Cla009093 Citrullus lanatus Cla009093 I 0.464
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.460
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.460
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.460
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.459
Bra025838 Brassica rapa Bra025838 I 0.459
HMGB3 Arabidopsis thaliana AT1G20696 I 0.459
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.459
Bo7g061420 Brassica oleracea Bo7g061420 I 0.459
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.459
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.459
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.459
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.459
Bo8g070350 Brassica oleracea Bo8g070350 I 0.459
MDP0000275042 Malus domestica MDP0000275042 I 0.458
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.458
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.458
mgf000913m Mimulus guttatus mgf000913m I 0.457
Bra002073 Brassica rapa Bra002073 I 0.457
HMGB4 Arabidopsis thaliana AT2G17560 I 0.455
mgf008076m Mimulus guttatus mgf008076m I 0.451
mgf006113m Mimulus guttatus mgf006113m I 0.451
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.451
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.451
mgf016608m Mimulus guttatus mgf016608m I 0.451
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.450
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.449
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.449
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.449
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.447
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.447
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.446
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.446
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.446
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.446
mgf014518m Mimulus guttatus mgf014518m I 0.445
29669.m000844 Ricinus communis 29669.m000844 I 0.445
HMG-1 Pisum sativum Q41026_PEA D 0.444
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.444
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.443
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.443
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.443
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.442
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.441
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.441
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.441
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.441
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.440
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.440
Bra037266 Brassica rapa Bra037266 I 0.440
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.440
Bo8g081200 Brassica oleracea Bo8g081200 I 0.438
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.438
Bo7g101270 Brassica oleracea Bo7g101270 I 0.438
Pm018913 Prunus mume Pm018913 I 0.438
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.438
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.438
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.438
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.438
MDP0000757111 Malus domestica MDP0000757111 I 0.438
MDP0000362980 Malus domestica MDP0000362980 I 0.438
HMGB1 Arabidopsis thaliana AT3G51880 I 0.438
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.438
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.438
HMGB2 Arabidopsis thaliana AT1G20693 I 0.438
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.438
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.438
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.438
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.438
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.438
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.438
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.438
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.438
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.438
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.438
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.438
Bo7g014280 Brassica oleracea Bo7g014280 I 0.436
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.436
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.436
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.436
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.436
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.436
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.436
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.436
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.434
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.434
Bo5g030580 Brassica oleracea Bo5g030580 I 0.432
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.431
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.431
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.431
TCM_034406 Theobroma cacao TCM_034406 I 0.431
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.431
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.431
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.431
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.431
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.431
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.431
30170.m014386 Ricinus communis 30170.m014386 I 0.431
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.431
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.431
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.431
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.431
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.431
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.430
Bra026498 Brassica rapa Bra026498 I 0.430
Bo2g160920 Brassica oleracea Bo2g160920 I 0.430
Bra029371 Brassica rapa Bra029371 I 0.430
Bo9g014140 Brassica oleracea Bo9g014140 I 0.429
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.429
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.427
Bra011624 Brassica rapa Bra011624 I 0.427
Bra017723 Brassica rapa Bra017723 I 0.427
Bo7g117500 Brassica oleracea Bo7g117500 I 0.427
Bo1g006360 Brassica oleracea Bo1g006360 I 0.427
30131.m007272 Ricinus communis 30131.m007272 I 0.424
GSPATT00005000001 Paramecium tetraurelia GSPATT00005000001 N 0.423
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.422
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.422
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.422
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.422
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.422
Pm002934 Prunus mume Pm002934 I 0.422
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.422
Ca_19340 Cicer arietinum Ca_19340 I 0.422
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.422
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.422
mgf016363m Mimulus guttatus mgf016363m I 0.422
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.422
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.422
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.421
Sb06g025440 Sorghum bicolor Sb06g025440 N 0.421
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.420
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.420
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.420
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.420
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.420
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.420
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.420
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.420
OS02G0670400 Oryza sativa OS02G0670400 N 0.420
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.420
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.420
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.420
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.420
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.420
Si018635m.g Setaria italica Si018635m.g N 0.420
OB02G34710 Oryza brachyantha OB02G34710 N 0.420
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.420
OBART02G27340 Oryza barthii OBART02G27340 N 0.420
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.419
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.419
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.418
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.418
OB09G25530 Oryza brachyantha OB09G25530 I 0.418
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.418
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.418
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.418
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.418
Si031512m.g Setaria italica Si031512m.g I 0.418
OS09G0551600 Oryza sativa OS09G0551600 I 0.418
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.418
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.418
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.418
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.418
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.417
HHAL000319-PA Halyomorpha halys HHAL000319-PA N 0.417
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.416
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.416
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.416
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.416
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.416
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.416
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.415
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.415