CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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Aquca_045_00054
(
Aquilegia coerulea
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Aquca_045_00054
T334375_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.622
0.725
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_045_00054.1
Sox
56
125
PKRPPSAFFVFLEEFRKTYKLEHPNNKAVSAVGKAGGEKWKSLSPAEKAPYEAKAAKRKTEYEKVMTSYN
Aquca_045_00054.2
Sox
56
125
PKRPPSAFFVFLEEFRKTYKLEHPNNKAVSAVGKAGGEKWKSLSPAEKAPYEAKAAKRKTEYEKVMTSYN
Aquca_045_00054.3
Sox
55
124
PKRPPSAFFVFLEEFRKTYKLEHPNNKAVSAVGKAGGEKWKSLSPAEKAPYEAKAAKRKTEYEKVMTSYN
Aquca_045_00054.4
Sox
56
125
PKRPPSAFFVFLEEFRKTYKLEHPNNKAVSAVGKAGGEKWKSLSPAEKAPYEAKAAKRKTEYEKVMTSYN
Aquca_045_00054.5
Sox
56
125
PKRPPSAFFVFLEEFRKTYKLEHPNNKAVSAVGKAGGEKWKSLSPAEKAPYEAKAAKRKTEYEKVMTSYN
Links
Other
Sox
family TFs
Other
Aquilegia coerulea
TFs
305 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy