Bostr.10199s0131 (Boechera stricta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Bostr.10199s0131 T334378_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.10199s0131.1.p Sox 116 184

Links

Other Sox family TFs
Other Boechera stricta TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.714
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.714
Bra026498 Brassica rapa Bra026498 I 0.703
Bo9g014140 Brassica oleracea Bo9g014140 I 0.703
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.614
Cla009222 Citrullus lanatus Cla009222 I 0.603
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.603
Bra029371 Brassica rapa Bra029371 I 0.598
Bo2g160920 Brassica oleracea Bo2g160920 I 0.598
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.579
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.579
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.573
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.567
HMGB7 Arabidopsis thaliana AT5G23420 N 0.567
MDP0000205665 Malus domestica MDP0000205665 I 0.564
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.562
Pm006054 Prunus mume Pm006054 I 0.562
TCM_007659 Theobroma cacao TCM_007659 I 0.556
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.553
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.550
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.546
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.535
30131.m007272 Ricinus communis 30131.m007272 I 0.529
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.518
mgf009124m Mimulus guttatus mgf009124m N 0.517
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.512
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.512
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.502
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.502
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.495
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.495
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.483
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.483
OBART08G00070 Oryza barthii OBART08G00070 I 0.483
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.483
OS08G0101100 Oryza sativa OS08G0101100 I 0.483
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.483
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.483
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.483
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.483
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.483
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.481
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.474
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.474
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.471
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.470
OB08G10120 Oryza brachyantha OB08G10120 N 0.464
Si014434m.g Setaria italica Si014434m.g N 0.463
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.461
Bra009681 Brassica rapa Bra009681 N 0.459
Ca_05351 Cicer arietinum Ca_05351 I 0.455
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.447
PK03866.1 Cannabis sativa PK03866.1 I 0.446
AAEL011425 Aedes aegypti AAEL011425 I 0.440
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.439
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.435
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.435
GB54571 Apis mellifera GB54571 N 0.432
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.430
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.430
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.430
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.428
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.426
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.426
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.425
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.424
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.422
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.420
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.419
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.419
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.416
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.415
Ssrp Drosophila melanogaster FBgn0010278 N 0.415
GF12460 Drosophila ananassae FBgn0089497 N 0.415
GD25013 Drosophila simulans FBgn0196325 N 0.415
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.415