Bostr.25463s0218 (Boechera stricta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Bostr.25463s0218 T334388_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.692 0.917
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.692 0.917
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.25463s0218.1.p Sox 138 205
Bostr.25463s0218.1.p Sox 255 321
Bostr.25463s0218.1.p Sox 381 449

Links

Other Sox family TFs
Other Boechera stricta TFs

Invalid Input OrderBy

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action