Cagra.1226s0043 (Capsella grandiflora)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cagra.1226s0043 T334403_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.591 0.771
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.591 0.771
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1226s0043.1.p Sox 142 210
Cagra.1226s0043.1.p Sox 259 325
Cagra.1226s0043.1.p Sox 383 451

Links

Other Sox family TFs
Other Capsella grandiflora TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.719
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.716
HMGB6 Arabidopsis thaliana AT4G23800 I 0.712
Bo1g037180 Brassica oleracea Bo1g037180 I 0.661
Bra013731 Brassica rapa Bra013731 I 0.661
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.634
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.621
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.612
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.601
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.594
HMGB13 Arabidopsis thaliana AT4G11080 D 0.591
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.587
TCM_016416 Theobroma cacao TCM_016416 I 0.531
Pm024077 Prunus mume Pm024077 I 0.528
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.528
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.528
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.526
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.525
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.516
Bra035256 Brassica rapa Bra035256 I 0.514
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.504
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.493
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.492
30190.m010807 Ricinus communis 30190.m010807 I 0.491
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.485
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.485
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.479
MDP0000268093 Malus domestica MDP0000268093 I 0.476
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.471
Cla011101 Citrullus lanatus Cla011101 I 0.470
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.461
mgf015439m Mimulus guttatus mgf015439m I 0.461
PK10992.1 Cannabis sativa PK10992.1 I 0.449
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.447
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.446
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.443
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.441
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.439
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.437
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.437
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.434
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.433
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.428
Ca_05811 Cicer arietinum Ca_05811 I 0.421
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.417