Cagra.7352s0006 (Capsella grandiflora)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cagra.7352s0006 T334411_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.7352s0006.1.p Sox 67 136

Links

Other Sox family TFs
Other Capsella grandiflora TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.741
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.735
Bo4g182600 Brassica oleracea Bo4g182600 N 0.700
Bra021911 Brassica rapa Bra021911 N 0.700
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.700
Ca_05162 Cicer arietinum Ca_05162 N 0.685
Ca_05164 Cicer arietinum Ca_05164 N 0.685
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.675
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.673
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.663
TCM_029514 Theobroma cacao TCM_029514 N 0.663
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.663
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.663
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.659
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.659
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.657
29693.m002035 Ricinus communis 29693.m002035 N 0.655
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.649
MDP0000695104 Malus domestica MDP0000695104 N 0.649
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.648
MDP0000143506 Malus domestica MDP0000143506 N 0.646
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.644
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.639
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.635
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.629
Si003021m.g Setaria italica Si003021m.g N 0.623
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.618
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.618
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.617
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.615
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.609
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.607
F775_05073 Aegilops tauschii F775_05073 I 0.606
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.606
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.604
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.598
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.595
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.594
PK22924.1 Cannabis sativa PK22924.1 N 0.592
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.591
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.591
mgf009922m Mimulus guttatus mgf009922m N 0.583
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.582
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.547
MDP0000170945 Malus domestica MDP0000170945 N 0.519
OB01G34910 Oryza brachyantha OB01G34910 I 0.512
OBART01G25720 Oryza barthii OBART01G25720 N 0.488
OS01G0666200 Oryza sativa OS01G0666200 N 0.488
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.488
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.488
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.488
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.488
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.488
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.486
MDP0000392251 Malus domestica MDP0000392251 N 0.481
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.461