Carubv10000930m.g (Capsella rubella)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Carubv10000930m.g T334412_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.671 0.878
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.671 0.878
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10000930m Sox 139 207
Carubv10000930m Sox 256 322
Carubv10000930m Sox 382 450

Links

Other Sox family TFs
Other Capsella rubella TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.733
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.679
HMGB13 Arabidopsis thaliana AT4G11080 D 0.671
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.662
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.637
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.621
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.618
HMGB6 Arabidopsis thaliana AT4G23800 I 0.600
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.596
Bra035256 Brassica rapa Bra035256 I 0.586
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.571
Bra013731 Brassica rapa Bra013731 I 0.546
Bo1g037180 Brassica oleracea Bo1g037180 I 0.546
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.538
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.524
TCM_016416 Theobroma cacao TCM_016416 I 0.524
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.518
Pm024077 Prunus mume Pm024077 I 0.518
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.515
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.515
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.512
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.505
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.504
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.499
mgf015439m Mimulus guttatus mgf015439m I 0.496
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.496
30190.m010807 Ricinus communis 30190.m010807 I 0.487
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.485
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.484
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.480
PK10992.1 Cannabis sativa PK10992.1 I 0.474
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.464
Cla011101 Citrullus lanatus Cla011101 I 0.462
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.453
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.450
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.436
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.433
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.431
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.429
Si017040m.g Setaria italica Si017040m.g I 0.429
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.428
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.426
OBART02G11160 Oryza barthii OBART02G11160 I 0.426
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.426
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.426
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.426
Ca_05811 Cicer arietinum Ca_05811 I 0.420
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.420
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.420
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.419
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.418
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.416
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.416