Carubv10007590m.g (Capsella rubella)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Carubv10007590m.g T334416_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.566 0.766
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.566 0.766
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007590m Sox 142 210
Carubv10007590m Sox 259 325
Carubv10007590m Sox 383 451

Links

Other Sox family TFs
Other Capsella rubella TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.716
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.694
HMGB6 Arabidopsis thaliana AT4G23800 I 0.686
Bo1g037180 Brassica oleracea Bo1g037180 I 0.661
Bra013731 Brassica rapa Bra013731 I 0.661
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.609
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.596
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.587
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.576
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.568
HMGB13 Arabidopsis thaliana AT4G11080 D 0.566
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.562
TCM_016416 Theobroma cacao TCM_016416 I 0.506
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.503
Pm024077 Prunus mume Pm024077 I 0.502
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.502
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.501
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.500
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.491
Bra035256 Brassica rapa Bra035256 I 0.489
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.479
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.468
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.468
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.466
30190.m010807 Ricinus communis 30190.m010807 I 0.466
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.460
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.459
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.454
MDP0000268093 Malus domestica MDP0000268093 I 0.450
PK10992.1 Cannabis sativa PK10992.1 I 0.449
Ca_05811 Cicer arietinum Ca_05811 I 0.446
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.446
Cla011101 Citrullus lanatus Cla011101 I 0.445
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.439
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.437
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.436
mgf015439m Mimulus guttatus mgf015439m I 0.436
Si017040m.g Setaria italica Si017040m.g I 0.425
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.421
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.420
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.416