CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10007590m.g
(
Capsella rubella
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Carubv10007590m.g
T334416_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.566
0.766
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.566
0.766
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10007590m
Sox
142
210
TKRPSSSYVLWCKEQWAEVKKENPEADFKETTNILGTKWKSLSAEDKKPYEERYQIEKEAYLQVIAKEK
Carubv10007590m
Sox
259
325
PKHPVSAFLVYANERRAALREENKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQEMEVYK
Carubv10007590m
Sox
383
451
PKKPASSYFLFSKDERKKLAEERPGTNNSTVTALISVKWKELGEEEKQVYNGKAAKLMEAYKKELEAYN
Links
Other
Sox
family TFs
Other
Capsella rubella
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy