Ciclev10017037m.g (Citrus clementina)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ciclev10017037m.g T334438_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10017037m Sox 67 136
Ciclev10017137m Sox 46 115

Links

Other Sox family TFs
Other Citrus clementina TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.741
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.741
TCM_029514 Theobroma cacao TCM_029514 N 0.741
29693.m002035 Ricinus communis 29693.m002035 N 0.733
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.695
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.694
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.686
MDP0000143506 Malus domestica MDP0000143506 N 0.684
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.683
MDP0000695104 Malus domestica MDP0000695104 N 0.683
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.680
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.676
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.676
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.673
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.670
PK22924.1 Cannabis sativa PK22924.1 N 0.670
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.663
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.663
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.663
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.662
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.662
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.659
Ca_05164 Cicer arietinum Ca_05164 N 0.654
Ca_05162 Cicer arietinum Ca_05162 N 0.654
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.647
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.645
F775_05073 Aegilops tauschii F775_05073 I 0.645
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.639
mgf009922m Mimulus guttatus mgf009922m N 0.639
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.638
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.635
Bra021911 Brassica rapa Bra021911 N 0.635
Bo4g182600 Brassica oleracea Bo4g182600 N 0.635
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.634
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.632
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.630
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.617
Si003021m.g Setaria italica Si003021m.g N 0.612
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.609
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.592
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.587
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.580
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.574
OB01G34910 Oryza brachyantha OB01G34910 I 0.544
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.537
MDP0000170945 Malus domestica MDP0000170945 N 0.530
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.512
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.512
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.512
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.512
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.512
OS01G0666200 Oryza sativa OS01G0666200 N 0.512
OBART01G25720 Oryza barthii OBART01G25720 N 0.512
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.509
MDP0000392251 Malus domestica MDP0000392251 N 0.492
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.488
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.478
GLYMA05G25892 Glycine max GLYMA05G25892 N 0.432
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.432
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.415
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.415