Ciclev10023918m.g (Citrus clementina)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ciclev10023918m.g T334443_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.445 0.678
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.445 0.678
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10023918m Sox 173 240
Ciclev10023918m Sox 289 355
Ciclev10023918m Sox 395 463

Links

Other Sox family TFs
Other Citrus clementina TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.536
TCM_016416 Theobroma cacao TCM_016416 I 0.531
Cla011101 Citrullus lanatus Cla011101 I 0.524
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.517
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.515
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.514
30190.m010807 Ricinus communis 30190.m010807 I 0.513
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.513
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.502
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.501
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.493
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.491
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.487
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.483
PK10992.1 Cannabis sativa PK10992.1 I 0.481
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.476
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.475
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.468
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.467
Pm024077 Prunus mume Pm024077 I 0.464
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.464
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.460
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.456
mgf015439m Mimulus guttatus mgf015439m I 0.456
Bo1g037180 Brassica oleracea Bo1g037180 I 0.454
Bra013731 Brassica rapa Bra013731 I 0.454
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.452
HMGB13 Arabidopsis thaliana AT4G11080 D 0.445
HMGB6 Arabidopsis thaliana AT4G23800 I 0.444
Si017040m.g Setaria italica Si017040m.g I 0.444
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.443
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.443
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.443
Bra035256 Brassica rapa Bra035256 I 0.436
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.433
Ca_05811 Cicer arietinum Ca_05811 I 0.430
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.429
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.427
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.421
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.418
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.418
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.418
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.417